| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0003 |
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| Symbol | |
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| ID | 4671061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 2149 |
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| End bp | 4158 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639837136 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_984335 |
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| Protein GI | 121592439 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTCGATG GCGTGGCCCA GCCCAATGCC GAATACGTAC TGGAAGGCAC GCCGAGCGAG
CGGCTGCTGA CCCAGCGCTC GCTGGTCATC CGCGACCGTG CGCGCGAGCG GTTCCCGCGG
GCGCCGGTGC TCGCGCGCAC CGGCGCGCGC AGCTACGTGG GCCAGCAGCT CACGGCCAGC
GACGGCACGC CCATCGGCAT GATCTTCGTG GTGTTCCGCC AGACGCTGGA GCGCAGCCGG
TTCGTCAGCA ACACGCTGCA GATCTTCGCC GCGCGCGCGG CCGCCGAACT GCAGCGCCAG
ACGGACGACC AGCGCATCCG CCAGCAGGCA TCGCTGCTGG ACAAGGCGCG CGACGCCATC
ATCGTGCGCG ACCTGGAGCA CCGCATCACG TTCTGGAACG AGGGCGCAGA GCGCATGTAC
GGCTGGTCGC GCGAGGAGGT CCTCGGCCGC TCCATCGCCA CGCTGCTGTA CCAGAACCCG
GAGGACTTCC TGCGCGCCAC CCAGCAGGTG ATGCAGCACG GCGTGTGGAG CGGCGAGATC
CTGCAGTGCG ACCGCGCGGG CCGCACCCTC GAAGCCGAGG GCCGCTGGAC GCTGGTGCGC
AACGACCGTG GCGAGCCCGA GTCGGTCCTC GCGATCAACG CCGACATCGG CACGCGCAAG
CACCAGGAGC GCGAGATCCA GCGCCTGGCC TTCTTCGACC CGCTCACCCA CCTGCCCAAC
CGCGTGCAGC TGCTGGACCG CGTGGACCAG GCCCTGGCCA AGGCGCAGCG CCTGGAGCAG
GGCGGGGCGC TGCTGTTCAT CGACCTGGAC AACTTCAAGA CCCTCAACGA CACGCTGGGC
CATGACCAGG GGGACGAGCT GCTGCAGATC GTGGCGCAGC GGCTGAACAC CTGCGTGCGT
AGCGCAGACA CGGTGGCGCG CCTGGGCGGC GACGAATTCG TGGTGCTGGT GGAGCAGCTC
AGCGCGCACA GCGACACGCT GGCGGAGCAG GCGGGCGCCG TGGGCGAGAA GATCCTCGCC
GTGCTCAGCG CCCCCTATGC GCTCACCGGG TACCAGCACC GCAGCACGCC CAGCATCGGC
ATCGCGCTGT TCAACCACGC GCCCACCACG GTGGGCGAAC TGCTCAAGCA GGCCGACCTG
GCGATGTACC AGGCCAAGAC CGCGGGACGC AACACGCTGC GCTTTTTCAA CCCGAGCATG
CAGCATGCCG TGGCCGAGCG TGCCTCGCTC GAGGCGGACC TGCGCAACGC GCTGGCGCAG
AAAGAGTTTC TGCTGCACTA CCAGCCGCAG ATCAATGCGC GGGGCGCGAT CGTGGGCGTG
GAGGCGTTGC TGCGCTGGGC GCACCCGCGG CGCGGCATGG TGTCGCCCGG GCAGTTCATT
CCGCTGGCCG AGGAGACCGG CCTGGTGCTG CCGCTGGGGC ACTGGGTGCT GCACACGGCG
TGCTCGGTGC TGGCCGATTG GCAGCGGGTG CCGGCGCTGG CGCCGCTGAC CATGGCAGTG
AATGTGAGCT CGCGCCAGTT CCGCGATGCG GGTTTCGTGG ACGACGTGGC GGGCGTGCTG
GCCGCCACCG GCGCGCCGGC CTCCCAGCTC AAGCTGGAAC TGACCGAGAG CCTGCTGGTG
GAGGACTTGG CCGCCACCAT TGCCACCATG GCGGCGCTGC GCGCGCTGGG CGTGGGCTTT
TCGCTGGACG ACTTCGGCAC CGGCTACTCG TCGCTGGCCT ACCTCAAGCG CATGCCGCTC
GGGCAGCTCA AGATCGACCA GAGCTTCGTG CGCGACCTGC TCACGGACCC CAACGACGCG
GCCATCGTGC GCACCATCAT CGGCCTGGCC GCCAGCCTGG GCCTGGAGGT GATCGCCGAG
GGCGTGGAGA CCAGCGCGCA GCGCGACTGG CTGGCGCACG CCGGCTGCGC GGTGTACCAG
GGTTACTTTT TCAGCCGGCC GCTGCCGCTG GACCTGCTGG AGCAACTGCT GCACGACCAC
ATCGCCGCAG CCCGCACGCC GTCTCTTTAA
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| Protein sequence | MVDGVAQPNA EYVLEGTPSE RLLTQRSLVI RDRARERFPR APVLARTGAR SYVGQQLTAS
DGTPIGMIFV VFRQTLERSR FVSNTLQIFA ARAAAELQRQ TDDQRIRQQA SLLDKARDAI
IVRDLEHRIT FWNEGAERMY GWSREEVLGR SIATLLYQNP EDFLRATQQV MQHGVWSGEI
LQCDRAGRTL EAEGRWTLVR NDRGEPESVL AINADIGTRK HQEREIQRLA FFDPLTHLPN
RVQLLDRVDQ ALAKAQRLEQ GGALLFIDLD NFKTLNDTLG HDQGDELLQI VAQRLNTCVR
SADTVARLGG DEFVVLVEQL SAHSDTLAEQ AGAVGEKILA VLSAPYALTG YQHRSTPSIG
IALFNHAPTT VGELLKQADL AMYQAKTAGR NTLRFFNPSM QHAVAERASL EADLRNALAQ
KEFLLHYQPQ INARGAIVGV EALLRWAHPR RGMVSPGQFI PLAEETGLVL PLGHWVLHTA
CSVLADWQRV PALAPLTMAV NVSSRQFRDA GFVDDVAGVL AATGAPASQL KLELTESLLV
EDLAATIATM AALRALGVGF SLDDFGTGYS SLAYLKRMPL GQLKIDQSFV RDLLTDPNDA
AIVRTIIGLA ASLGLEVIAE GVETSAQRDW LAHAGCAVYQ GYFFSRPLPL DLLEQLLHDH
IAAARTPSL
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