Gene Ajs_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_0003 
Symbol 
ID4671061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp2149 
End bp4158 
Gene Length2010 bp 
Protein Length669 aa 
Translation table11 
GC content70% 
IMG OID639837136 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_984335 
Protein GI121592439 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTCGATG GCGTGGCCCA GCCCAATGCC GAATACGTAC TGGAAGGCAC GCCGAGCGAG 
CGGCTGCTGA CCCAGCGCTC GCTGGTCATC CGCGACCGTG CGCGCGAGCG GTTCCCGCGG
GCGCCGGTGC TCGCGCGCAC CGGCGCGCGC AGCTACGTGG GCCAGCAGCT CACGGCCAGC
GACGGCACGC CCATCGGCAT GATCTTCGTG GTGTTCCGCC AGACGCTGGA GCGCAGCCGG
TTCGTCAGCA ACACGCTGCA GATCTTCGCC GCGCGCGCGG CCGCCGAACT GCAGCGCCAG
ACGGACGACC AGCGCATCCG CCAGCAGGCA TCGCTGCTGG ACAAGGCGCG CGACGCCATC
ATCGTGCGCG ACCTGGAGCA CCGCATCACG TTCTGGAACG AGGGCGCAGA GCGCATGTAC
GGCTGGTCGC GCGAGGAGGT CCTCGGCCGC TCCATCGCCA CGCTGCTGTA CCAGAACCCG
GAGGACTTCC TGCGCGCCAC CCAGCAGGTG ATGCAGCACG GCGTGTGGAG CGGCGAGATC
CTGCAGTGCG ACCGCGCGGG CCGCACCCTC GAAGCCGAGG GCCGCTGGAC GCTGGTGCGC
AACGACCGTG GCGAGCCCGA GTCGGTCCTC GCGATCAACG CCGACATCGG CACGCGCAAG
CACCAGGAGC GCGAGATCCA GCGCCTGGCC TTCTTCGACC CGCTCACCCA CCTGCCCAAC
CGCGTGCAGC TGCTGGACCG CGTGGACCAG GCCCTGGCCA AGGCGCAGCG CCTGGAGCAG
GGCGGGGCGC TGCTGTTCAT CGACCTGGAC AACTTCAAGA CCCTCAACGA CACGCTGGGC
CATGACCAGG GGGACGAGCT GCTGCAGATC GTGGCGCAGC GGCTGAACAC CTGCGTGCGT
AGCGCAGACA CGGTGGCGCG CCTGGGCGGC GACGAATTCG TGGTGCTGGT GGAGCAGCTC
AGCGCGCACA GCGACACGCT GGCGGAGCAG GCGGGCGCCG TGGGCGAGAA GATCCTCGCC
GTGCTCAGCG CCCCCTATGC GCTCACCGGG TACCAGCACC GCAGCACGCC CAGCATCGGC
ATCGCGCTGT TCAACCACGC GCCCACCACG GTGGGCGAAC TGCTCAAGCA GGCCGACCTG
GCGATGTACC AGGCCAAGAC CGCGGGACGC AACACGCTGC GCTTTTTCAA CCCGAGCATG
CAGCATGCCG TGGCCGAGCG TGCCTCGCTC GAGGCGGACC TGCGCAACGC GCTGGCGCAG
AAAGAGTTTC TGCTGCACTA CCAGCCGCAG ATCAATGCGC GGGGCGCGAT CGTGGGCGTG
GAGGCGTTGC TGCGCTGGGC GCACCCGCGG CGCGGCATGG TGTCGCCCGG GCAGTTCATT
CCGCTGGCCG AGGAGACCGG CCTGGTGCTG CCGCTGGGGC ACTGGGTGCT GCACACGGCG
TGCTCGGTGC TGGCCGATTG GCAGCGGGTG CCGGCGCTGG CGCCGCTGAC CATGGCAGTG
AATGTGAGCT CGCGCCAGTT CCGCGATGCG GGTTTCGTGG ACGACGTGGC GGGCGTGCTG
GCCGCCACCG GCGCGCCGGC CTCCCAGCTC AAGCTGGAAC TGACCGAGAG CCTGCTGGTG
GAGGACTTGG CCGCCACCAT TGCCACCATG GCGGCGCTGC GCGCGCTGGG CGTGGGCTTT
TCGCTGGACG ACTTCGGCAC CGGCTACTCG TCGCTGGCCT ACCTCAAGCG CATGCCGCTC
GGGCAGCTCA AGATCGACCA GAGCTTCGTG CGCGACCTGC TCACGGACCC CAACGACGCG
GCCATCGTGC GCACCATCAT CGGCCTGGCC GCCAGCCTGG GCCTGGAGGT GATCGCCGAG
GGCGTGGAGA CCAGCGCGCA GCGCGACTGG CTGGCGCACG CCGGCTGCGC GGTGTACCAG
GGTTACTTTT TCAGCCGGCC GCTGCCGCTG GACCTGCTGG AGCAACTGCT GCACGACCAC
ATCGCCGCAG CCCGCACGCC GTCTCTTTAA
 
Protein sequence
MVDGVAQPNA EYVLEGTPSE RLLTQRSLVI RDRARERFPR APVLARTGAR SYVGQQLTAS 
DGTPIGMIFV VFRQTLERSR FVSNTLQIFA ARAAAELQRQ TDDQRIRQQA SLLDKARDAI
IVRDLEHRIT FWNEGAERMY GWSREEVLGR SIATLLYQNP EDFLRATQQV MQHGVWSGEI
LQCDRAGRTL EAEGRWTLVR NDRGEPESVL AINADIGTRK HQEREIQRLA FFDPLTHLPN
RVQLLDRVDQ ALAKAQRLEQ GGALLFIDLD NFKTLNDTLG HDQGDELLQI VAQRLNTCVR
SADTVARLGG DEFVVLVEQL SAHSDTLAEQ AGAVGEKILA VLSAPYALTG YQHRSTPSIG
IALFNHAPTT VGELLKQADL AMYQAKTAGR NTLRFFNPSM QHAVAERASL EADLRNALAQ
KEFLLHYQPQ INARGAIVGV EALLRWAHPR RGMVSPGQFI PLAEETGLVL PLGHWVLHTA
CSVLADWQRV PALAPLTMAV NVSSRQFRDA GFVDDVAGVL AATGAPASQL KLELTESLLV
EDLAATIATM AALRALGVGF SLDDFGTGYS SLAYLKRMPL GQLKIDQSFV RDLLTDPNDA
AIVRTIIGLA ASLGLEVIAE GVETSAQRDW LAHAGCAVYQ GYFFSRPLPL DLLEQLLHDH
IAAARTPSL