Gene Pnap_4078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4078 
Symbol 
ID4688519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4358323 
End bp4359075 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content70% 
IMG OID639837091 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_984290 
Protein GI121606961 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.708574 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGCGC GCTTTTATGC CGACGTGGCG CTCGCCGCCG GAACGTCCAT CAGCCTGCCC 
GAGCAGACTG CCCGCCATGT GCAGGTGCTG CGCCTGCAGC CGGGCGAGCG CATCACGCTG
TTCAACGGCC GGGGCGACAC TGAAGGCGAA TTCGACGCCA CCGTCGAGCG CATGGGCCGC
AGCGACGTGG ACGTGACCAT CGGCGCCTGG ACTGCCACCG CGCGCGAGGC CGCGCGCACC
ATCCACCTGG TCGTCGGCAT GCCGGCCAAC GACCGCATGG ACTGGCTGAT CGAAAAAGCC
ACCGAACTCG GCGCGGCCAG CATCCAGCCG GTGATGAGCG AGCGCAGCGT GCTGCGCCTC
AAGGCCGAGC GCGCCGACAA GAAGGTCGCG CACTGGCGCG GCATCGCCAT CGCATCGAGC
GAACAGTGCG GGCGCAACCG GGTGCCGCTG ATTCACGACG TGGCGACGCT GGGCGAATGG
CTGAAGAAAA GCACGGCGGA AACCGGCGCC GCCGCCAGCA ACGGCATGCG GCTGCTGCTG
TCGCTGCAGG ACGGCAGCAG GCCGCTGGCT GAAGCCGTCG CCAGCACCGC ACTGGCCTCC
TTCACGTTTC TCAATGGCCC GGAAGGCGGC CTGAGCCCGG CCGAGGAAGC CGCCGCCCTT
GCCTGCGGCT TCAGCCCGGT CACGCTCGGG CCGCGCGTGC TGCGCGCCGA AACCGCGCCG
CTGGCCGCGC TGGCCACGCT GCTCTGTTAT TAA
 
Protein sequence
MSARFYADVA LAAGTSISLP EQTARHVQVL RLQPGERITL FNGRGDTEGE FDATVERMGR 
SDVDVTIGAW TATAREAART IHLVVGMPAN DRMDWLIEKA TELGAASIQP VMSERSVLRL
KAERADKKVA HWRGIAIASS EQCGRNRVPL IHDVATLGEW LKKSTAETGA AASNGMRLLL
SLQDGSRPLA EAVASTALAS FTFLNGPEGG LSPAEEAAAL ACGFSPVTLG PRVLRAETAP
LAALATLLCY