| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4070 |
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| Symbol | putA |
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| ID | 4689536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 4344490 |
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| End bp | 4348458 |
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| Gene Length | 3969 bp |
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| Protein Length | 1322 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639837083 |
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| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_984282 |
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| Protein GI | 121606953 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAGTATG TCGAAAACAT CGAGCGGGGT CAGTTGCCGC AAGGTACAAC CCTGGGTGCA
ACCGATGGTA TCCAGAAAAC CGGGCTTGAC GATGCCGGCG AGCCGCTCCT GCCGGTCAAT
ACCACGCTTT CTTCTCAGCC CTTCCTGGAC TGGGCGCAAA ACGTCCTGCC GCAGACCAGC
TTGCGCGCCG CCGTCACCGC CGCCTGGCAC CGGCCCGAGG AAGAGTGCCT GCCCATGCTG
GTGCAACTGG CGCACACCGG CGATGCCGCC CAGCGCGCCG CCATCGAAGA CGTCGCCACC
CGGCTCGTGC AAGGCCTGCG CGGCAGACAA GACGCCGGCG GCGTGGAAGC GCTGGTGCAG
GAATTCTCGC TCTCCAGCCA GGAAGGCGTG GCGCTGATGT GCCTGGCCGA GGCGCTGCTG
CGCATTCCCG ACAACGCCAC GCGCGACGCG CTGATCCGCG ACAAGATCAG CCGTGGCGAC
TGGCATGCGC ACCTGGGCAA TTCGCCGTCG ATGTTTGTCA ACGCCGCCGT CTGGGGGCTG
ATGCTGACCG GCAAGCTGAC CGCCACCAGC AGCGAAAAAA GCCTGGGCTC GTCGCTGACC
CGTCTGATCG GCAAGGGCGG CGAGCCGCTG ATCCGCCAGG GCGTGCACCG CGCCATGAAG
CTCATGGGCG AGCAGTTCGT GACCGGCCAG ACCATCTCCG AAGCCCTGGC CAACAGCCGC
GCGCTGGAAA AGGCCGGCTT TCGCTATTCC TACGACATGC TGGGCGAAGC CGCCGCGACC
GAGCAGGACG CCGAGCGCTA CCTGGCGTCC TACGAGCAGG CCATCCATGC CATCGGCAAG
GCGTCGCACG GGCGCGGCAT CCATGAAGGG CCGGGCATTT CGGTCAAGCT GTCGGCGCTG
CACCCGCGCT ACAGCCGCGC CCAGCGCGAC CGGGTGATGG GCGAGCTGCT GCCGCGACTG
CTCAGGCTCA CGCTGCTGGC GCGCCGCTAC GACATCGGCC TGAACATTGA CGCCGAGGAG
GCCGACCGGC TCGAACTCTC GCTCGACCTG CTTGAAAGCC TGTGCTTCGA CCCGGCGCTC
AAGGGCTGGA ACGGCATCGG CTTCGTGGTG CAGGCCTACC AGAAGCGCTG CCCCTACGTG
ATCGACTACC TGATCGACCT GGCCAGGCGC AGCAGCCACC GACTGATGGT GCGGCTGGTC
AAGGGCGCCT ACTGGGACAG CGAGATCAAG CGCGCGCAAG AGGGTGGCCT GGACGGCTAC
CCGGTGTTCA CGCGCAAGGT GCACACCGAC GTTTCCTACC TGGCCTGCGC GCGCAAGCTG
CTGGCCGCGC CCGACGCTGT TTACCCGCAG TTCGCCACCC ACAATGCGCA GACCGTAGCA
AGCATCTACC ACATGGCTGG TGGCAACTAC TACAGCGGCC AGTACGAATT CCAGTGCCTG
CACGGCATGG GCGAGCCGCT GTATGAGCAG GTCACGGGCA GTGCCGCCGA CGGCAAGCTG
GCCCGCCCCT GCCGCATCTA CGCCCCGGTC GGCACGCACG AGACGCTGCT GGCCTACCTG
GTGCGCCGCC TGCTGGAGAA CGGCGCCAAC ACCTCGTTCG TCAACCGCAT CGGCGATGCC
AGCGTGCCGG TGGCCGAACT GGTCGTTGAC CCGGTGGCTG ACGTGCGCCA GATCGCGCTT
GAAACCGGCC GGCTGGGCGC GCCGCACCCG AAGATCGCGC TGCCGCGCCA GCTGTTTGCC
AACCTGGGCG CGCAGTCGCG GCTGAACTCG TCGGGCCTGA ACCTGGCGCA CGAGCAGCAA
CTGGCGTCGC TTGCCGCCGG CCTGCTGCGC AGCACCCAGG TCACTTACGC TGCAGCGGCC
AGCGTTGCCG ACGTTTCATC CTTCGATCCG GACAAGGCCG TAGCCGACGG CTGGCAGCCT
GTCTTGAACC CGGCCGACAC GCGCGACCAG GTCGGCTGGG TGCGCCCGGC CACCGCGCAG
GAAGTCGAGC AGGTCGTCAG CCGCGCCGCC AGCGCCGCGC AGATCTGGCA GGGCACGCCG
CCGCAGGAGC GCGCCGCCTG CTTGACACGC GCGGCCGACC TGCTGGAGCA GCGCACGCAA
AGCCTGCTGG GCCTGATCGT GCGCGAAGCC GGCAAGTCGC TGCCCAACGC GATTGCCGAG
GTGCGCGAAG CGGTGGACTT TTTGCGCTAC TACGCCGCCC AGGTCGAGGC GACCTTCGAC
AACGACTCGC ACCGCCCGCT CGGTGTGGTG CTGTGCATCA GCCCGTGGAA CTTCCCGCTG
GCGATTTTCA CCGGCCAGGT GGCCGCCGCG CTGGCCAGCG GCAACTGCGC GCTGGCCAAG
CCGGCCGAGC AGACGCCGCT GGTTGCCGGT GTGATGGTGA ACATCCTGCA CGAAGCCGGC
GTGCCGCAGG ATGCCGTGCA GCTGGTGCCC GGCGCGGGTG ATACCGTCGG CGCGGCGCTG
GTGGCGCACC GTCAGGTGGC CGGCGTGATG TTCACCGGCT CGACCGAAGT GTCGCGGCTG
ATCGCGCAGA CGCTGGCGAA ACGCCTGAGC CCGCAGGGCC GCTGCATCCC GCTGATCGCC
GAGACCGGCG GCCAGAACGC GCTGGTGGCC GACTCGTCGG CGCTGGCCGA GCAGCTGGTC
GGCGACGTGC TGGCCTCAAG CTTTGATTCG GCCGGCCAGC GCTGCTCGGC GCTGCGCCTG
CTGTGCATCC AGGAAGACGG CGCTGAGCGC GTGGTCCATA TGATCAAGGA AGCCATGCGC
GAATGGGTCA TGGGCAACCC CGACCGCATG CACACCGATG TCGGCCCGGT GATCGACGAG
GACGCGCGCA TCCAGATCGA GCGGCACATT GCCGCCATGC AGGCCGCAGG CCAGAGCGTC
ACCCGCATGG CGCGTGACGA AAGCGCCGGC CAGGGCCATT TCGTGATGCC CGCGCTGATC
GAGATCGACA GCATCCAGCG CCTCAAGCGC GAGGTCTTCG GCCCGGTGCT GCATGTGCTG
CGCTACCGCC GCGAGCAGCT CGGCGAGGTG CTGGACGCGA TCAACGCCAC CGGCTACGGC
CTGACCTTCG GCGTGCACAG CCGCATCGAC GAAACCATTG CCCAGGTCAC GCAGAAGGTG
CAGGCCGGCA ATATCTACGT CAACCGCAAT GTGATTGGCG CGGTGGTCGG CGTGCAGCCC
TTCGGCGGAA TGGGCCTGTC CGGCACCGGC CCCAAGGCGG GCGGCCCGCT CTACCTGTAC
CGCCTGCTGC AGGCCGGCCA GTCGCAGGGC AAGCTGGCGC TGGCTGCGCT GCCGGCGATG
CCCGTCAGCC GCACGTCCGC GCCCGCCATC GGGCGCGACC CGGCCGATGT GCCCGCGCTG
AAGGCGCTGC AAAGCCTGGG CGCTGCATTG CAAGGCCCCC AATTTGCCGC GCTGGCGGGC
TGGCAGGGCA GCGGTGACGC CGCACTGGCC GTGGCCGCGT GCGAAGCGTA CCGCGCCAGC
AGCGTGCTGG GCCAGCTGTT CACCCTGCCC GGACCCACCG GCGAGTCGAA CCGCTACCAG
CTGCTGCCGC GCGGCGCCGT CTGGGCCGCG CCGCAGACCG CGCTCGGCCT GGTGCACCAG
GTAGCGGCGG CGCTGGCCAG CGGCAACCCG TGCTGGCTGG AGACGCCTGC GGCCAGCAGC
GCCGTGGCGC AGGCGCTGGC CGCGCTGCCG CCCGAGGCGC AGGGCTTTGT CGAGTCACGC
ACCACCGCGC AACTGCTGGG CGAGACGCAG CTGAGCGCGA TGCTGTTCGA GGGCGATGGC
GACGCGCTGC AGGCCTTGTT GCCGCGCGTC GCGCAGCGCC CCGGCGCCCT CGTGCGGATT
GAAAACCTGA CCCCGGCGCA ACTGGCCGAC GGCGCCCTGT ACGACATGAG CGCGCTGATG
CATGAGCAAA GCATCAGCAC CAACACCGCC GCAGCCGGCG GCAACGCGCA GCTCATGACG
ATGGGCTGA
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| Protein sequence | MQYVENIERG QLPQGTTLGA TDGIQKTGLD DAGEPLLPVN TTLSSQPFLD WAQNVLPQTS
LRAAVTAAWH RPEEECLPML VQLAHTGDAA QRAAIEDVAT RLVQGLRGRQ DAGGVEALVQ
EFSLSSQEGV ALMCLAEALL RIPDNATRDA LIRDKISRGD WHAHLGNSPS MFVNAAVWGL
MLTGKLTATS SEKSLGSSLT RLIGKGGEPL IRQGVHRAMK LMGEQFVTGQ TISEALANSR
ALEKAGFRYS YDMLGEAAAT EQDAERYLAS YEQAIHAIGK ASHGRGIHEG PGISVKLSAL
HPRYSRAQRD RVMGELLPRL LRLTLLARRY DIGLNIDAEE ADRLELSLDL LESLCFDPAL
KGWNGIGFVV QAYQKRCPYV IDYLIDLARR SSHRLMVRLV KGAYWDSEIK RAQEGGLDGY
PVFTRKVHTD VSYLACARKL LAAPDAVYPQ FATHNAQTVA SIYHMAGGNY YSGQYEFQCL
HGMGEPLYEQ VTGSAADGKL ARPCRIYAPV GTHETLLAYL VRRLLENGAN TSFVNRIGDA
SVPVAELVVD PVADVRQIAL ETGRLGAPHP KIALPRQLFA NLGAQSRLNS SGLNLAHEQQ
LASLAAGLLR STQVTYAAAA SVADVSSFDP DKAVADGWQP VLNPADTRDQ VGWVRPATAQ
EVEQVVSRAA SAAQIWQGTP PQERAACLTR AADLLEQRTQ SLLGLIVREA GKSLPNAIAE
VREAVDFLRY YAAQVEATFD NDSHRPLGVV LCISPWNFPL AIFTGQVAAA LASGNCALAK
PAEQTPLVAG VMVNILHEAG VPQDAVQLVP GAGDTVGAAL VAHRQVAGVM FTGSTEVSRL
IAQTLAKRLS PQGRCIPLIA ETGGQNALVA DSSALAEQLV GDVLASSFDS AGQRCSALRL
LCIQEDGAER VVHMIKEAMR EWVMGNPDRM HTDVGPVIDE DARIQIERHI AAMQAAGQSV
TRMARDESAG QGHFVMPALI EIDSIQRLKR EVFGPVLHVL RYRREQLGEV LDAINATGYG
LTFGVHSRID ETIAQVTQKV QAGNIYVNRN VIGAVVGVQP FGGMGLSGTG PKAGGPLYLY
RLLQAGQSQG KLALAALPAM PVSRTSAPAI GRDPADVPAL KALQSLGAAL QGPQFAALAG
WQGSGDAALA VAACEAYRAS SVLGQLFTLP GPTGESNRYQ LLPRGAVWAA PQTALGLVHQ
VAAALASGNP CWLETPAASS AVAQALAALP PEAQGFVESR TTAQLLGETQ LSAMLFEGDG
DALQALLPRV AQRPGALVRI ENLTPAQLAD GALYDMSALM HEQSISTNTA AAGGNAQLMT
MG
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