| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3988 |
|---|
| Symbol | |
|---|
| ID | 4686678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 4254750 |
|---|
| End bp | 4255964 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639837004 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_984203 |
|---|
| Protein GI | 121606874 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.326194 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGTCG GTAACACCTT TGGTTTCAAC TCCGTGCAAC TACTTACCGG GGCAAGCGAG
CTTGACAGCG CCGTAAAAAT AGCGCCGCGG CGCCTTCGCC GATTGACAGC CGGGTTTTTG
CCCCCGACGA TTAAAAACCC CGCAACCACT TCCACCACTT CCACCACTTC CAGGCTAGAC
ACCATGCCCA ACTCCGACGC CCCCCAGCCC TTTGCCCCCG TCGTGGTCCT GACCGGCGCC
TCCAGCGGCA TCGGCCACGC CACCGCACTG GCCTTTGCCC GCGCGGGCGC GCGCCTGGTG
CTGGCGGCAC GCGGTGCCCA GGCGCTGGAC CGGGTGGCCG CCGAATGCGA GCTGCTGGAC
GCCCGGGCGC TGGCCGTGCC GACCGACGTG ACCGATGCCG ACGCCATGCG CGCGCTGGCC
GACGCCGCCA TCGAGCGCTT TGGCCACATC GATGTCTGGA TCAACAACGC CGGCACCGGC
GCGGTCGGCG CCTTCGACGC CACGCCCATC GAGGCGCACC AGCGGGTCAT CGAGTCCAAC
CTGATCGGCC ACCTCAACGG CGCGCATGCG GTGCTGCCGC ATTTTCGAAA GCAGGGGCGC
GGCACGCTGA TCAACATGAT CTCTTCCGGC GGCTGGGTCG CCACGCCTTA CGCGGCGGCC
TACACCGCCA GCCAGTTCGG GCTGCGCGGC TTTTCCGAAG CGCTGCGCGC CGAGCTGGGC
AGCCTGCCGG GCGTGCATGT CTGCGAGGTG TACCCGGCGT TTGTCGATAC GCCGGGCCTG
CTGCACGGCG CCAACTACAC CGGCAAGCGG CTGCGCCCGG CGCCGCCCGT GCTCGACCCG
CGCCAGGTCG CGGACAGCCT GGTGGCCTTG GCCAAAGCGC CGCGCGACGT GACCTCGATA
GGCAGCGCGG CGCTGCCCGG ACGGCTGGCG CATGCCGTGG CGCCCGGGCT GACCGGCCGC
GTCAGCGCCT GGTTCACCAA CCGCGCCCTC AACCGCGCCG ACCCGGCGCC GATCACCAAC
GGCAACCTGT TCGAGCCGTC CCGCGTCCAC ACGATTGACG GCGGCCACCG CACGCTGGCG
ACGCGCGCCG CGCCGCTGGC GGCAGTGGCG CTGGCCGGCG CGCTCGGGCT GGGGCTGCTG
TGGGCGCTGC GCTCGCGCAG GCCGCATCAG CAAGGCCCCG CCCGTTCACG GCGGGCGGCA
GGCTGGCAAG GCTGA
|
|---|
| Protein sequence | MMVGNTFGFN SVQLLTGASE LDSAVKIAPR RLRRLTAGFL PPTIKNPATT STTSTTSRLD
TMPNSDAPQP FAPVVVLTGA SSGIGHATAL AFARAGARLV LAARGAQALD RVAAECELLD
ARALAVPTDV TDADAMRALA DAAIERFGHI DVWINNAGTG AVGAFDATPI EAHQRVIESN
LIGHLNGAHA VLPHFRKQGR GTLINMISSG GWVATPYAAA YTASQFGLRG FSEALRAELG
SLPGVHVCEV YPAFVDTPGL LHGANYTGKR LRPAPPVLDP RQVADSLVAL AKAPRDVTSI
GSAALPGRLA HAVAPGLTGR VSAWFTNRAL NRADPAPITN GNLFEPSRVH TIDGGHRTLA
TRAAPLAAVA LAGALGLGLL WALRSRRPHQ QGPARSRRAA GWQG
|
|---|
| |