Gene Pnap_3987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3987 
Symbol 
ID4686691 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4252471 
End bp4254627 
Gene Length2157 bp 
Protein Length718 aa 
Translation table11 
GC content67% 
IMG OID639837003 
Productputative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane 
Protein accessionYP_984202 
Protein GI121606873 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0395504 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.53474 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCAAC GAATAAATCA ACATCAAAAG GACGACATGA CCATCATCAT TGCAGGCAAA 
AACACCTTGA CGCTCACCTC GCTGGCCGCT GCCGTACTGG CGCTCGGCGC CTGCGGCGGG
AACAGTGATC CTTTCGAAAG CAAAAACACC AAGCCGGCCT ACCTGGGCGC CGTCGCCATC
GCCAGCTACG ACGGCGCCAG CGACGACCTG CTCACCGCCG GCCTCGGCAA GACCGGCCTG
GGCGGGACCG CGCCGGCCGT GGCCGACCCG CTGAAGCCGA CCCCCGCCGA ACTGCGCCGG
CTGGCGATTT TCAACAACTA CCGCGCCATC CTCGACATCA GCACGAACGG CGGCTACGGC
ACGCTGTATG GCCCGAACGT CGATGCCAAG GGCGTCATCA CCACCGGCGA AGGCAAGATC
GCCGGGACCG AATACATCGC CTACTCCGAC GACGGCACGG GCAGGCAGAA CATCACCATG
ATGGTGCAGG TGCCGGCCAG CTTCAACCCG GCCAATGCCT GCATCGTGAC CGGCACCTCC
AGCGGCTCGC GCGGCGTGTA CGGCGCCATC GGCTCGGCCG GCGAGTGGGG CCTGAAAAAC
GGCTGCGCCG TGGCCTACAC CGACAAGGGC ACGGGCACCG GCATCCACGA CCTGCAGAAC
AACACCGTCA ACGTGCAAAA CGGCGTTCGC ACCGACGCCG CTGCCGCCGG AAAAAACTCG
ATCTTCACCG CCGAACTGAG CGCCTCCGAG CGGGCCGCCT TCAACGCGGC CACGCCGAAC
CGCTTTGCCG TCAAGCATGC GCATTCGCAG CAGAATCCTG AAAAGGACTG GGGCAAATGG
ACGCTGCAAT CGGTCGAGTT CGCCTATTTC GTGCTGAATG AAAAATACGG CGACCTGGCC
CGGGACGGCG CGACGCACCT GAAAAAGCTC ACGCCGTCGA ACACCATCGT GATCGCCTCC
AGCGTGTCCA ACGGCGCCGG CGCGGCGCTG GCGGCGGCAG AGCAGGACAC GCAGGGCCTG
ATCAGCGGCG TGGCGGTGGC CGAGCCCGAA GTGCAACTGG CGCCCGACGC CCGCCTGAGC
GTCAAGCGCG GCGCCAGCGT GCTGGTCGGC ACCGGCAAGC CGCTATATGA CTATTTCACG
CTGGCCAATT TGCTGCAGCC TTGCGCGGCG CTGGTGTCTC CCGCCACGAA CGCCTTCAAC
ACGGTCAACG CGGCGACTGC CACCAACCGC TGCAGCGCCC TCAAGGCCAA CGGCCTGGTC
ACCGGCACCA CGACCGCCGA ACAGGCCGCC AGCGCGCTGG CCGCGCTGGT CGCGGCGGGC
TGGCAGCCGG AAAGCAATGT GCTGCAGGCC TCGCACTACT CGTTTGCAAC GCTGTCGGTC
GGGCTGACGT ATGCCAACAC CTATGGCCGC TTCAGCGTCA AGGACAACCT GTGCGGCTTC
AGCTTCGCGG CCACCGGCGC CGCCGCATCG GCGACGCCGA ACGCCCCGGT TCCGGCTTCC
GCCAGCGCGC TGGCGACCTC GTTCGGCGCG TCCAACGGCG TGCCGCCGAC CATCGGCATC
AACATCGTCA ACAACCTCAG CGCGGGCGGA CCCTTGCTCG ATGCCGCCTC GCTGTCGGCC
GGCGGTGTGC AGGACTACAA CATCGCCGGC GCGCTGTGCA TGCGCGAGCT GGCTACCGGA
AGCAGCGCCA ACGCCGTGCG CGTCAGGCAG GGCATGAGCG AAGTGGTGCG CAGCGCCAAC
CTGCGCGGCA AGCCGGCGCT GATCGTGCAG GGCCGGGCCG ACACGCTGCT GCCGGTGGCC
TTCACCGGCC GGCCTTACTA CGGCATGAAC AAGATCGTCG AAGGCACGGC TAGCCGGCTG
TCGTACATCG AGGTGACCAA TGCCCAGCAT TTCGACGCCT TCCTCGCCTT CCCGGGCTAT
CCGGAACGCA TGGTGCCGCT GCACCGCTAC TTCATCCAGG CGATGGACAT GATGTATGCC
AACCTGAAGA CCGGCGCCGC CCTGCCGGCC AGCCAGGTAG TGCGCACCGT GCCGCGCGGC
CTGACGGGCG CCGTGGCCAA TCCGATTGCC GCCAGCAATG TGCCGCCGAT CAAGACGACG
CCCGCCGCCG CTGACCAGAT CACCTTCGCC AACAACGTGG TGACCATCGC CGACTGA
 
Protein sequence
MNQRINQHQK DDMTIIIAGK NTLTLTSLAA AVLALGACGG NSDPFESKNT KPAYLGAVAI 
ASYDGASDDL LTAGLGKTGL GGTAPAVADP LKPTPAELRR LAIFNNYRAI LDISTNGGYG
TLYGPNVDAK GVITTGEGKI AGTEYIAYSD DGTGRQNITM MVQVPASFNP ANACIVTGTS
SGSRGVYGAI GSAGEWGLKN GCAVAYTDKG TGTGIHDLQN NTVNVQNGVR TDAAAAGKNS
IFTAELSASE RAAFNAATPN RFAVKHAHSQ QNPEKDWGKW TLQSVEFAYF VLNEKYGDLA
RDGATHLKKL TPSNTIVIAS SVSNGAGAAL AAAEQDTQGL ISGVAVAEPE VQLAPDARLS
VKRGASVLVG TGKPLYDYFT LANLLQPCAA LVSPATNAFN TVNAATATNR CSALKANGLV
TGTTTAEQAA SALAALVAAG WQPESNVLQA SHYSFATLSV GLTYANTYGR FSVKDNLCGF
SFAATGAAAS ATPNAPVPAS ASALATSFGA SNGVPPTIGI NIVNNLSAGG PLLDAASLSA
GGVQDYNIAG ALCMRELATG SSANAVRVRQ GMSEVVRSAN LRGKPALIVQ GRADTLLPVA
FTGRPYYGMN KIVEGTASRL SYIEVTNAQH FDAFLAFPGY PERMVPLHRY FIQAMDMMYA
NLKTGAALPA SQVVRTVPRG LTGAVANPIA ASNVPPIKTT PAAADQITFA NNVVTIAD