| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3952 |
|---|
| Symbol | |
|---|
| ID | 4688233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 4216463 |
|---|
| End bp | 4217359 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639836969 |
|---|
| Product | succinyl-CoA synthetase subunit alpha |
|---|
| Protein accession | YP_984168 |
|---|
| Protein GI | 121606839 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.087179 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATCT ACATCAACAA AAACACCAAA GTCATCACGC AAGGCATTAC CGGCAAGACC
GGTCAATTCC ATACCCGCAT GTGCCGCGAG TACGCGAACG GCAAAGAAGC GTTCGTGGCC
GGCGTGAACC CCAAGAAAGC CGGCGAAGAC TTTGAAGGCA TCCCGATTTT CGCCAACGTG
ACCGAAGCCG CCCAGGCGAC CGGCGCCACG GTGTCGGTGA TTTACGTGCC ACCCGCAGGC
GCAGCTGCCG CCATCTGGGA AGCTGTTGAA GCCAACCTGG ACCTGGCCAT TTGCATCACC
GAAGGCATCC CGGTCAAGGA CATGCTGGAA GTGCGCAACC GCATGAAGGC CAAGGAAGCT
GCTGGCGGCA AGAAAACCCT GCTGCTCGGC CCCAACTGCC CCGGCCTGAT CACGCCCGAC
GAGATCAAGA TCGGCATCAT GCCCGGCCAC ATCCACCGCG CCGGCCGTAT CGGCGTCGTG
AGCCGTTCCG GCACGCTGAC CTATGAAGCC GTGGCGCAAC TGACCGAAAT CGGTCTGGGC
CAGTCCAGCG CTGTCGGCAT CGGCGGCGAC CCGATCAATG GCCTCAAGCA CATCGACGTG
ATGCGCGCCT TCAATGACGA CCCGGACACC GACGCCGTCA TCATGATTGG CGAAATCGGC
GGCCCCGATG AAGCCGAAGC GGCCGAATGG TGCAAAGCCA ACATGAAAAA GCCTATCGTC
GGCTTCATCG CTGGCGTGAC CGCGCCAGCG GGCAAGCGCA TGGGCCACGC CGGTGCCTTG
ATTTCTGGCG GCGCCGACAC GGCCGACGCC AAGCTGGCGA TCATGGAAGC CTGCGGCTTC
ACCGTCACGC GCAATCCGTC CGAGATGGCG AAATTGCTCA AGGCGCTGCT GAAATAA
|
|---|
| Protein sequence | MSIYINKNTK VITQGITGKT GQFHTRMCRE YANGKEAFVA GVNPKKAGED FEGIPIFANV
TEAAQATGAT VSVIYVPPAG AAAAIWEAVE ANLDLAICIT EGIPVKDMLE VRNRMKAKEA
AGGKKTLLLG PNCPGLITPD EIKIGIMPGH IHRAGRIGVV SRSGTLTYEA VAQLTEIGLG
QSSAVGIGGD PINGLKHIDV MRAFNDDPDT DAVIMIGEIG GPDEAEAAEW CKANMKKPIV
GFIAGVTAPA GKRMGHAGAL ISGGADTADA KLAIMEACGF TVTRNPSEMA KLLKALLK
|
|---|
| |