| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3885 |
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| Symbol | secD |
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| ID | 4689515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 4139881 |
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| End bp | 4141758 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639836903 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_984102 |
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| Protein GI | 121606773 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.527535 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGTT ATCCGGCCTG GAAGTACGCC CTTATCGTGG TCGTGCTGCT GATTGCAGCC
CTGTACACGC TGCCCAATTT CTTTGGCGAA GCGCCCGCGG TGCAGGTCTC CAGCAGCAAG
TCCACCGTCA AGGTGGACAC GACGACGCTG GCCAGGGTCG AGCAGGCGCT GAAAGAGGCC
AACATATCGG CCGATGGCAT CACGCTGGAA GCGGGCTCCA TCAAGGCGCG CTTTGGTGAT
GTTGATACCC AGGGCAAGGC CAAGGACGCC ATCCAGAAGG CGCTGACGCC CGATGCCGCC
GATCCGGCCT ATGTGGTCGC GCTCAACCTG CTGTCTCGCT CGCCCGCCTG GTTGACCTCG
CTGAACGCCA ACCCGATGTA CCTGGGGCTC GATTTGCGCG GCGGCGTGCA TTTCATGCTG
CAGGTGGACA TGCAGGCGGC GCTCACCAAA CGCGCCGAAT CGCTGGCCGG CGACATTCGC
CTGTCGCTGC GCGAAAAGAA CATCCGGCAC GGCGGCATCG CCCGCAATGG CCAGGCCATC
GAAATCCGGT TCCGTGACTC CGCCACGCTG ACATCGGCCA AGAACCTGAT CCAGGACCAG
ATTCCCGATC TGCAGATGGT CGAAGCGCCG GACGGCACCG ACTACAAGCT GACCGCGACC
ATCAAGCCCG AGGCCGCGCG CCGCATCCAG GACCAGGCGC TCAAGCAGAA CATGGTGACG
CTGCACAACC GCATCAACGA ACTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCATA
GACCGCATCG TGGTGCAGCT GCCCGGCGTT CAGGACACGG CCAAGGCCAA GGACATTCTG
GGCCGCACCG CCACGCTGGA AATGCGCCTG GTCGAGGACA GCGCCGAAGC CCGAGCCGCC
GAGAGCGGCA GCGGCCCGGT GCCTTTTGGC TCGGAGCGCT TTTTCGAGCG CAACGGCCAG
GCGGTGATCG TCAAGAAGCA GGTGATCCTG ACCGGCGAGA ACCTGACCGA TGCGCAGCCG
GGCTTTGATT CGCAGAACCA GCAGCCCAAG GTCGATCTGA CGGTCGATGC CAAGGGCGGC
CGCATCATGC GCGACACCAG CCGTGAAAAC CTCAAAAAGC GCATGGCGAT TTTGCTGTTT
GAAAAAGGCA AGGGCGAAGT GCTGACCGCG CCGGTCATCC AGGGCGAACT GGGCAACCGG
TTCCAGATTT CCGGCTCCAT GAGCGTGAAT GAAGCCAGCG ACCTGGCGCT GCTGCTGCGT
GCCGGCTCAC TGGCCGCACC GATGGACATC ATCGAGGAGC GCACCATCGG CCCGACGCTG
GGCGCCGAAA ACATCACCAA GGGTTTTCAC AGCGTGTCCT GGGGCTTTGC GGTGATCGTG
GCCTTCATGG CGACTTACTA CATGCTGTTC GGCCTGTTTT CGGGCATTGC GCTGGCGGTC
AACTTGCTGC TGCTGGTGGC CGTGCTGTCC ATGCTGCAGG CCACCCTGAC CCTGCCGGGC
ATGGCGGCGA TGGCGCTGGC ACTCGGCATG GCGATTGACT CCAACGTGCT GATCAATGAA
CGCATCCGCG AGGAACTGCG CAACGGTGCC TCGCCGCAGG CCGCCATTCA TGCGGGCTAT
GAGCGCGCCT GGGCGACGAT CCTGGACTCG AACATCTCGA CGCTGATTGC CGGCCTGGCC
TTGCTCGCCT TTGGTTCCGG GCCGGTTCGC GGCTTTGCCG TGGTGCATTG CATCGGCATT
CTGACCAGCA TGTTTTCGGC GGTGTTTTTC TCGCGCGGTT TGGTCAACCT CTGGTATGGC
CGGCAGAAAA AGCTCAAGAC CGTGTCGATT GGCACGGTAT GGCGTCCGCC TTCAGAGGGC
GGACTCGCCA AGTCATGA
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| Protein sequence | MNRYPAWKYA LIVVVLLIAA LYTLPNFFGE APAVQVSSSK STVKVDTTTL ARVEQALKEA
NISADGITLE AGSIKARFGD VDTQGKAKDA IQKALTPDAA DPAYVVALNL LSRSPAWLTS
LNANPMYLGL DLRGGVHFML QVDMQAALTK RAESLAGDIR LSLREKNIRH GGIARNGQAI
EIRFRDSATL TSAKNLIQDQ IPDLQMVEAP DGTDYKLTAT IKPEAARRIQ DQALKQNMVT
LHNRINELGV AEPVIQQQGI DRIVVQLPGV QDTAKAKDIL GRTATLEMRL VEDSAEARAA
ESGSGPVPFG SERFFERNGQ AVIVKKQVIL TGENLTDAQP GFDSQNQQPK VDLTVDAKGG
RIMRDTSREN LKKRMAILLF EKGKGEVLTA PVIQGELGNR FQISGSMSVN EASDLALLLR
AGSLAAPMDI IEERTIGPTL GAENITKGFH SVSWGFAVIV AFMATYYMLF GLFSGIALAV
NLLLLVAVLS MLQATLTLPG MAAMALALGM AIDSNVLINE RIREELRNGA SPQAAIHAGY
ERAWATILDS NISTLIAGLA LLAFGSGPVR GFAVVHCIGI LTSMFSAVFF SRGLVNLWYG
RQKKLKTVSI GTVWRPPSEG GLAKS
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