Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3885 |
Symbol | secD |
ID | 4689515 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 4139881 |
End bp | 4141758 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639836903 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_984102 |
Protein GI | 121606773 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.527535 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGTT ATCCGGCCTG GAAGTACGCC CTTATCGTGG TCGTGCTGCT GATTGCAGCC CTGTACACGC TGCCCAATTT CTTTGGCGAA GCGCCCGCGG TGCAGGTCTC CAGCAGCAAG TCCACCGTCA AGGTGGACAC GACGACGCTG GCCAGGGTCG AGCAGGCGCT GAAAGAGGCC AACATATCGG CCGATGGCAT CACGCTGGAA GCGGGCTCCA TCAAGGCGCG CTTTGGTGAT GTTGATACCC AGGGCAAGGC CAAGGACGCC ATCCAGAAGG CGCTGACGCC CGATGCCGCC GATCCGGCCT ATGTGGTCGC GCTCAACCTG CTGTCTCGCT CGCCCGCCTG GTTGACCTCG CTGAACGCCA ACCCGATGTA CCTGGGGCTC GATTTGCGCG GCGGCGTGCA TTTCATGCTG CAGGTGGACA TGCAGGCGGC GCTCACCAAA CGCGCCGAAT CGCTGGCCGG CGACATTCGC CTGTCGCTGC GCGAAAAGAA CATCCGGCAC GGCGGCATCG CCCGCAATGG CCAGGCCATC GAAATCCGGT TCCGTGACTC CGCCACGCTG ACATCGGCCA AGAACCTGAT CCAGGACCAG ATTCCCGATC TGCAGATGGT CGAAGCGCCG GACGGCACCG ACTACAAGCT GACCGCGACC ATCAAGCCCG AGGCCGCGCG CCGCATCCAG GACCAGGCGC TCAAGCAGAA CATGGTGACG CTGCACAACC GCATCAACGA ACTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCATA GACCGCATCG TGGTGCAGCT GCCCGGCGTT CAGGACACGG CCAAGGCCAA GGACATTCTG GGCCGCACCG CCACGCTGGA AATGCGCCTG GTCGAGGACA GCGCCGAAGC CCGAGCCGCC GAGAGCGGCA GCGGCCCGGT GCCTTTTGGC TCGGAGCGCT TTTTCGAGCG CAACGGCCAG GCGGTGATCG TCAAGAAGCA GGTGATCCTG ACCGGCGAGA ACCTGACCGA TGCGCAGCCG GGCTTTGATT CGCAGAACCA GCAGCCCAAG GTCGATCTGA CGGTCGATGC CAAGGGCGGC CGCATCATGC GCGACACCAG CCGTGAAAAC CTCAAAAAGC GCATGGCGAT TTTGCTGTTT GAAAAAGGCA AGGGCGAAGT GCTGACCGCG CCGGTCATCC AGGGCGAACT GGGCAACCGG TTCCAGATTT CCGGCTCCAT GAGCGTGAAT GAAGCCAGCG ACCTGGCGCT GCTGCTGCGT GCCGGCTCAC TGGCCGCACC GATGGACATC ATCGAGGAGC GCACCATCGG CCCGACGCTG GGCGCCGAAA ACATCACCAA GGGTTTTCAC AGCGTGTCCT GGGGCTTTGC GGTGATCGTG GCCTTCATGG CGACTTACTA CATGCTGTTC GGCCTGTTTT CGGGCATTGC GCTGGCGGTC AACTTGCTGC TGCTGGTGGC CGTGCTGTCC ATGCTGCAGG CCACCCTGAC CCTGCCGGGC ATGGCGGCGA TGGCGCTGGC ACTCGGCATG GCGATTGACT CCAACGTGCT GATCAATGAA CGCATCCGCG AGGAACTGCG CAACGGTGCC TCGCCGCAGG CCGCCATTCA TGCGGGCTAT GAGCGCGCCT GGGCGACGAT CCTGGACTCG AACATCTCGA CGCTGATTGC CGGCCTGGCC TTGCTCGCCT TTGGTTCCGG GCCGGTTCGC GGCTTTGCCG TGGTGCATTG CATCGGCATT CTGACCAGCA TGTTTTCGGC GGTGTTTTTC TCGCGCGGTT TGGTCAACCT CTGGTATGGC CGGCAGAAAA AGCTCAAGAC CGTGTCGATT GGCACGGTAT GGCGTCCGCC TTCAGAGGGC GGACTCGCCA AGTCATGA
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Protein sequence | MNRYPAWKYA LIVVVLLIAA LYTLPNFFGE APAVQVSSSK STVKVDTTTL ARVEQALKEA NISADGITLE AGSIKARFGD VDTQGKAKDA IQKALTPDAA DPAYVVALNL LSRSPAWLTS LNANPMYLGL DLRGGVHFML QVDMQAALTK RAESLAGDIR LSLREKNIRH GGIARNGQAI EIRFRDSATL TSAKNLIQDQ IPDLQMVEAP DGTDYKLTAT IKPEAARRIQ DQALKQNMVT LHNRINELGV AEPVIQQQGI DRIVVQLPGV QDTAKAKDIL GRTATLEMRL VEDSAEARAA ESGSGPVPFG SERFFERNGQ AVIVKKQVIL TGENLTDAQP GFDSQNQQPK VDLTVDAKGG RIMRDTSREN LKKRMAILLF EKGKGEVLTA PVIQGELGNR FQISGSMSVN EASDLALLLR AGSLAAPMDI IEERTIGPTL GAENITKGFH SVSWGFAVIV AFMATYYMLF GLFSGIALAV NLLLLVAVLS MLQATLTLPG MAAMALALGM AIDSNVLINE RIREELRNGA SPQAAIHAGY ERAWATILDS NISTLIAGLA LLAFGSGPVR GFAVVHCIGI LTSMFSAVFF SRGLVNLWYG RQKKLKTVSI GTVWRPPSEG GLAKS
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