| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3884 |
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| Symbol | secF |
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| ID | 4689479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 4138889 |
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| End bp | 4139842 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639836902 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_984101 |
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| Protein GI | 121606772 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0703005 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTTT TCAAAATCCG GCGCGATATT CCGTTCATGC GGCACGCGCT GATCTTCAAC
CTCATCAGTT TCGTCACCTT CGCGCTGGCG GTGTTTTTCC TGTTCTCGCG CGGACTGCAC
CTGTCGGTTG AATTCACCGG CGGCACCCTG ATGGAGGTGA ACTACACCCA GGCCGCCGAT
GTTGGCAAGA TCCGCGACAC CGTGGCCGGT TTGGGCCTGA ACGATGTCCA GGTGCAGAAT
TTCGGCACCT CGCGCGACGT GATGATCCGC CTGCCGGCGC AAAAGGGCGT CAGCACCGCG
CAGCAGAGCG ATACCGTGCT GGCTGCGCTT AAGACCGCCA GCCCCGACGT GACGCTGCGC
CGCACCGAGT TCGTCGGCCC GCAGGTGGGC GAAGAACTGG CCCAGGACGG CCTCAAGGCG
CTGGCCATGG TGGTGTTCGG CATCATGGTC TATCTGGCGT TTCGTTTCGA GTGGAAATAT
GCGGTCGCGG CGATCATCGC CAACTTGCAT GACGTGATCA TCATTCTTGG ATTTTTCGCC
TTTTTCCAGT GGGAGTTTTC GCTGGCGGTG CTGGCTGCCG TGCTGGCGGT GCTGGGTTAT
TCGGTCAACG AATCGGTGGT GATTTTTGAC CGGATTCGCG AGAACTTCCG CCGTTACCGC
AAGATGAACA CGGAGGAGAT CATCAACAAC GCGATCACTT CCACCATCAG CCGCACCATC
ATCACCCACG GCTCGACTCA GATCATGGTG CTGTCGATGC TGCTGTTCGG CGGCCCGACG
CTGTTTTACT TTGCGCTGGC ACTGACCATC GGCATTTTGT TCGGCATCTA TTCCTCGGTG
TTTGTCGCCG CTGCGATTGC GATGTGGCTG GGCATCAAGC GTGAAGACTT GATCAAGGGA
CCGGCGAAAA AAGACGAGGA TCCCAACGAT CCGAACGCAG GCGCCACGGT CTAG
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| Protein sequence | MEFFKIRRDI PFMRHALIFN LISFVTFALA VFFLFSRGLH LSVEFTGGTL MEVNYTQAAD
VGKIRDTVAG LGLNDVQVQN FGTSRDVMIR LPAQKGVSTA QQSDTVLAAL KTASPDVTLR
RTEFVGPQVG EELAQDGLKA LAMVVFGIMV YLAFRFEWKY AVAAIIANLH DVIIILGFFA
FFQWEFSLAV LAAVLAVLGY SVNESVVIFD RIRENFRRYR KMNTEEIINN AITSTISRTI
ITHGSTQIMV LSMLLFGGPT LFYFALALTI GILFGIYSSV FVAAAIAMWL GIKREDLIKG
PAKKDEDPND PNAGATV
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