| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3879 |
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| Symbol | |
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| ID | 4689104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 4131823 |
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| End bp | 4133115 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639836897 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_984096 |
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| Protein GI | 121606767 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTTAT CCGTACCAAA AAGTAAGCGC CGCCAGTCCC AAACAAGCTT CAAGATGCCT
ACTATTTTTG CTCGCTTCAG TCATATTTCA ATCGCCGCGG CCGCCTTGCT GGCCACTTCA
ACCGGCGTAC AGGCCCAGAA CTTCCCCGTC ACGCCCGCCC AGCAGGCCAC GGCCGTCCAG
GTGGCCCGGA CCGGAGTTCC GGTGGCCGAC CTGGCGCCCA ATGCGCCTGA CAGCTACACC
GTCAGGCCGG GCGACACCCT GTGGGCCATT TCGGGCATGT TCCTCAAGGG TCCGTGGCGC
TGGCCCGAAT TGTGGGGCAT GAACCTGGAG GACATCCGCA ATCCGCACCG CATCTATCCC
GGCCAGCAGC TCTACCTGGA CAAAAGCAAT GGCCGGGCCA CCTTGCGAAC CCGCCGGGCA
GGCGGCGGCG ACAGCAGCAG CAGCAGCAGC GCAGCCATGA ACACCATCCG GGTGTCTCCG
CGCACCCGCT ACGAGTCGCT GGCCGACACC TCCATTCCCA CATTGGCGCC CCAGGCCATC
GAGCCCTTCC TGGCCGAGCC GCTGATTGTT GACGAGCTGA CCTTTTCGCA GGCGCCGCGC
ATCGTGGCCA CGCAGGAGGG CCGGGTGCTG CTCAGCCGGG GCGACCGGGC CTATGTGCTC
AGCGCGTATG CCGCAGGTGG CGGCAGCAAG CCCTTGAGCG ACCACAAAGG CGAGCCGCGG
GACTACCGGG TGTTTCGCAA CGCCACGCCG CTCAAGGATC CGACCACCCA GCAAATCCTG
GGCTACGAAG CGCAATACGT CGGCAAGGCC GAACTGGTGC GCGGCGAGTC CACGGCCCAG
AGCAGCGACA AAGACGGCAA AACGCAAATC GACATCGTTC CCGCCACCAT CGACATCGTG
GCGGCCAAGG AAGAAATGCG GGTCGGCGAC CGGCTGATTC CCGAGCCGCC CCGCGAGTTG
CGCAGCTATG TGCCGCACGC GCCCTCGTCG CCCATGTCCG GGCAGATCGT CTCGGTGTAT
GGCAATGCCG TGGCTTGGGC TTCTGAAAAC CAGATCGTGG TGATCAACCG CGGGACCAGC
GACGGGCTGG AGCGCGGTCA TGTCATGGCC ATCCTGAAAG ACGGCGAACG CCTGACGGAC
AAAACGGACA GCGACCGGCC GGACATCAAG CTGCCCAACG AGCGCAATGG CCTGCTGATG
GTGTTCCGCA CCTTTGACCG GCTGTCGTAT GCGCTGGTGA TGCAGGTCAC CGATGGCGTC
AAGGTCGGCG ACCGCTTCAC CAACCCGAAC TGA
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| Protein sequence | MRLSVPKSKR RQSQTSFKMP TIFARFSHIS IAAAALLATS TGVQAQNFPV TPAQQATAVQ
VARTGVPVAD LAPNAPDSYT VRPGDTLWAI SGMFLKGPWR WPELWGMNLE DIRNPHRIYP
GQQLYLDKSN GRATLRTRRA GGGDSSSSSS AAMNTIRVSP RTRYESLADT SIPTLAPQAI
EPFLAEPLIV DELTFSQAPR IVATQEGRVL LSRGDRAYVL SAYAAGGGSK PLSDHKGEPR
DYRVFRNATP LKDPTTQQIL GYEAQYVGKA ELVRGESTAQ SSDKDGKTQI DIVPATIDIV
AAKEEMRVGD RLIPEPPREL RSYVPHAPSS PMSGQIVSVY GNAVAWASEN QIVVINRGTS
DGLERGHVMA ILKDGERLTD KTDSDRPDIK LPNERNGLLM VFRTFDRLSY ALVMQVTDGV
KVGDRFTNPN
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