Gene Pnap_3834 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3834 
Symbol 
ID4688960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4090725 
End bp4091747 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content63% 
IMG OID639836852 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_984051 
Protein GI121606722 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAATA GCCAGATTCT CAGCACGGAT GACCTTGCCA GCACAGAGCG TGCGCTGGCC 
TGGGAGCACT GGATGTCGGG GCTTTTTGGC GGACTGGACT CCGACCTGTA TGGCGATAGC
GTGTTTGATG GACATATTGC CACTTCGCAT GCCGGTGACG TGGTGATGAC CCGGCTGGAG
GCCAATCGGC ACCGCGTCAT GCGCAGTCCC GGCCTGGCGC GGACCAGCGA CATGAGTTAC
CTGAAGATCA TCGCGCCCTG GCAAGGCAAC GCCGCGCTGG AGCAGCAGGG CCGGCAAACC
TGGGTGCGTC CCGGCGGCTG GGCGATTTAT GACACGACCG GCAGCTACGA AGTGGCCAAC
CCCGAACGCT CCCTGCACCT GATCGTGATG CTGCCCAGGG AGCAACTGAC CGAGCGCGGC
TTGCGCATCG ATGCGCTGAT GGGACGGCTC GTAGGCGGCA GCAGCGGCAT TTCGCGCGTG
GCGCTGGAAA CGATGCGCAG CATTTTTCAG GAACTGCCCC TCATGACGCC CGAGGCGGCC
CGGGGTGCTG GCGATCTGGT GATTGATCTG GTGCGTTTGT CGCTACAGGA GCTGGCCGGC
CGGACCACCG CCACGACGCA GCAGGAGGCT TTGAAGGATC GCATCCGCGA CTTCATTGGC
CAGCACCTGC GCGACCCGGA CCTGTCGCTG GACCGCATTG CCCAGGTGCT CAACTGCAGC
AAGCGGCATC TGCACAATGC CTTTGCCGAT GAAGAAGACA CGCTGGGCCA TTACATCTTG
CGCCGGCGGC TGCAGGCCTG CATGCGGGAT TTGAAGAACC CGGTACACCT GCCGCGCACC
ATCACCGACA TTGCGTTTTC CTGGGGCTTC AATAACGGAA CGCACTTCAG TCGCGTGTTT
CGCGAACACG CCGGGCTGTC ACCCAGCGAA TTCAGGCGGG CGGCGCTGTT GAAAGAAGAG
GTCATCCCGG CCCCCCTGCC CATTCCTGGC CGGATGCACT GGAAACAAAA AAATCAGCTC
TGA
 
Protein sequence
MPNSQILSTD DLASTERALA WEHWMSGLFG GLDSDLYGDS VFDGHIATSH AGDVVMTRLE 
ANRHRVMRSP GLARTSDMSY LKIIAPWQGN AALEQQGRQT WVRPGGWAIY DTTGSYEVAN
PERSLHLIVM LPREQLTERG LRIDALMGRL VGGSSGISRV ALETMRSIFQ ELPLMTPEAA
RGAGDLVIDL VRLSLQELAG RTTATTQQEA LKDRIRDFIG QHLRDPDLSL DRIAQVLNCS
KRHLHNAFAD EEDTLGHYIL RRRLQACMRD LKNPVHLPRT ITDIAFSWGF NNGTHFSRVF
REHAGLSPSE FRRAALLKEE VIPAPLPIPG RMHWKQKNQL