| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3817 |
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| Symbol | mnmA |
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| ID | 4687533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 4070983 |
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| End bp | 4072167 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639836835 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_984034 |
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| Protein GI | 121606705 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.709755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAAGC AACACAGCAA GCAACGGATC GTGGTGGGTT TGAGCGGCGG CGTCGATTCA
GCGGTGACCG CGTACCTGCT CAAGCAACAG GGCCACGAGG TCATCGGCAT CTTCATGAAG
AACTGGGAAG ACGACGACGA CAGCGAATTC TGCTCGTCCA ACATCGACTT CGTTGACGCG
GCCGCCGTCG CCGACGTGAT CGGCATCGAG ATCGAGCATG TCAACTTTGC CGCCAACTAC
AAGGACCGGG TGTTCGCCGA GTTCCTGCGT GAATACCAGG CCGGCCGCAC GCCCAACCCA
GACATTTTGT GCAACGCCGA GATCAAGTTC AAGGCCTTCC TGGACCACGC GATGCGGCTG
GGCGCCGAAA AAATCGCCAC CGGCCACTAC GCCAGAGTGC GCCAGAACGA AGCCACCGGC
CTGCACGAAC TACTCAAGGG CCTGGACCCG TCCAAGGACC AGAGCTACTT TTTGCACCGG
CTGAACCAGG CGCAACTCTC GAAAACGCTG TTCCCGGTCG GCGAGCTGCA CAAGACCGAG
GTGCGCCGCA TCGCGGACGA GATCGGCCTG CCGAACGCCA GGAAAAAGGA CTCGACCGGC
ATCTGTTTCA TCGGCGAGCG GCCGTTCCGC GATTTCTTGA ACCGCTACAT CGCCAAGGCG
CCGGGCCCGG TCAAAAACGA CCAGGGTCGC ATCCTGGGCG AACACGTCGG CCTGAGCTTC
TACACGCTGG GCCAGCGCCA GGGGCTGGGC ATTGGCGGGG TGAAAGCCCG GGGCGCCGAC
CTGAAGGCGG CGCAGGCGCG CGGCCAGCGC GGCGTGGGCG AGCATGAGCC GTGGTTTGTC
GCGCGCAAGG ACATGGACAG CAACACCTTG TGGGTGGTGC AGGGCCACGA TCATCCGTGG
CTGCAATCGA CGCTGCTCAA TGCGCAGGAT TGCAGCTGGG TGGCGGGCAG CGCGCCGGCC
CTGGGCGCAA TGGCCGCCAA GACGCGCTAC CGCCAGGCCG ATGCCGCCTG CGAACTGGTC
AGCGCCACGG CCGGCGGCTG CGAACTGGCG TTTCTAGATG CCCAGTGGGC GGTGACGCCG
GGCCAGTCGG CCGTGCTCTA CCAGGGCGAG GTTTGCCTGG GCGGCGGCGT GATTGCTTCG
AGCAATGTGC AGAACCTGCC CGGCGGCAAG CCAGCGGTGG CCTGA
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| Protein sequence | MDKQHSKQRI VVGLSGGVDS AVTAYLLKQQ GHEVIGIFMK NWEDDDDSEF CSSNIDFVDA
AAVADVIGIE IEHVNFAANY KDRVFAEFLR EYQAGRTPNP DILCNAEIKF KAFLDHAMRL
GAEKIATGHY ARVRQNEATG LHELLKGLDP SKDQSYFLHR LNQAQLSKTL FPVGELHKTE
VRRIADEIGL PNARKKDSTG ICFIGERPFR DFLNRYIAKA PGPVKNDQGR ILGEHVGLSF
YTLGQRQGLG IGGVKARGAD LKAAQARGQR GVGEHEPWFV ARKDMDSNTL WVVQGHDHPW
LQSTLLNAQD CSWVAGSAPA LGAMAAKTRY RQADAACELV SATAGGCELA FLDAQWAVTP
GQSAVLYQGE VCLGGGVIAS SNVQNLPGGK PAVA
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