Gene Pnap_3779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3779 
Symbol 
ID4686707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4031105 
End bp4032025 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content54% 
IMG OID639836797 
Productcytochrome c oxidase, cbb3-type, subunit III 
Protein accessionYP_983996 
Protein GI121606667 
COG category[C] Energy production and conversion 
COG ID[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID[TIGR00782] cytochrome c oxidase, cbb3-type, subunit III 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGATT TCACCAGTAA TTTCTGGTCG GTCTACGTGA CGGCCATCTC TCTGGTCGGT 
ATCTTTGCCT GCCTGCTGCT TTTGTGGTTT AGCGGCAAGG CCAAAGCCAT GACCGCCAAT
GACAATACCA CCGGCCACGT CTGGGACGGC GACCTGCGCG AGATGAACAA TCCCCTGCCG
CGCTGGTGGG TGTGGCTGTT CATCATCACC GTGGTATTTT CCCTGGCTTA CCTGGCGATG
TACCCAGGTC TCGGCAGTTA TGCTGGCAAG TTTGGCTGGA GCCAGGTTGG TCAGTACGAA
GCCGAAGTGG CCAAGGGCAA CAAGGAAGTT GAACCCTTGT ATGCCAAATT CAACAGCATG
AAGCCCGAGG ACGTGGCCGG TGATGCACAA GCCATGGCGA TTGGCGAACG TTTGTTCATG
AACAACTGTT CACAATGCCA CGGATCAGAC GCCCATGGCA GCAAAGGATT TCCCAACCTG
ACGGATAAAG ACTGGCTGCA CGGCGGTACG CCCGACAAGA TTGTACAAAC GCTGACGAAG
GGCCGTATCG GCAACATGCC GCCCATGGCC GCTGCTGTCG GTTCATCCGA TGACGTACGC
AATGTGGCAA ATTATGTTTT GAGCCTGTCC GGAAGTCCGC ACGATTCAGT CAAGGCGGCT
CTTGGGAAAA GCAAATTTGG CGCGTGCGCG GCTTGTCATG GTGCCGATGG AAAGGGAAAC
CAGGCCATTG GCTCACCTAA CCTGACCGAT GACATCTGGT TGCATGGATG GGGTGAAAAT
GCCATTGTGG CCATGGTCAA TAATGGCAAG GTGAACCAGA TGCCAGCCCA GGAGCATAAA
CTCACTGAAT CTCAAATTCA TGTTTTGGCA TCCTATGTGT GGAGTTTGTC CAACAAGCCA
GGCGCAGTAG CGCTGAAGTG A
 
Protein sequence
MSDFTSNFWS VYVTAISLVG IFACLLLLWF SGKAKAMTAN DNTTGHVWDG DLREMNNPLP 
RWWVWLFIIT VVFSLAYLAM YPGLGSYAGK FGWSQVGQYE AEVAKGNKEV EPLYAKFNSM
KPEDVAGDAQ AMAIGERLFM NNCSQCHGSD AHGSKGFPNL TDKDWLHGGT PDKIVQTLTK
GRIGNMPPMA AAVGSSDDVR NVANYVLSLS GSPHDSVKAA LGKSKFGACA ACHGADGKGN
QAIGSPNLTD DIWLHGWGEN AIVAMVNNGK VNQMPAQEHK LTESQIHVLA SYVWSLSNKP
GAVALK