| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3769 |
|---|
| Symbol | holA |
|---|
| ID | 4687748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 4022153 |
|---|
| End bp | 4023256 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639836787 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_983986 |
|---|
| Protein GI | 121606657 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATGG CTCCTGCCCA ACTGACCGAA CACCTCAAGC GGGGCCTGAA AAGCCTCTAC
ACCCTGCATG GCGACGAACC CCTGCTGGTG CAGGAATTCG CCGATGCCCT GCGCGCGGCG
GCACGGCAGC GTGGCTACAC CGAACGCACG GTCCACACCG TGGCCGGCGC GCATTTCGAC
TGGAGCGAGG TGCTGGCCAG CGGCGGCTCG CTGAGCCTGT TTGCCGACAA GCAGATCGTT
GAGGTCCGCA TTCCCAGCGG CAAGCCGGGC AAGGACGGCT CGGTGGCGCT GCAGCAACTG
GCCGAACGCG CCCAGGGCGA CGATTCCACG CTGACGCTGG TCATGCTGCC CCGGCTGGAC
GGCGCCACCA CCAAGGGCGC CTGGTTTGGC GCGCTCGAGA GTTTCGGCGT GACCGTCAAG
TTCGAGCCGA TTGACCGGCG CACGCTGCCG CAATGGATCG CGCAGCGCCT GCAACTGCAG
GGCCAGCGCG TGGCCAACGG CGAGGAAGGC CAGCGCACGC TGCAGTTTTT TGCCGACCGG
GTCGAGGGCA ACCTGCTGGC CGCGCACCAG GAAATCCAGA AACTGGCGCT GCTCTACCCG
GTCACGGGCG ACGGCATCCT GAGTTTTGAC CAGGTTGAAA ACGCCGTGCT CAACGTGGCG
CGCTACGACG TGTTCAAGCT GTCTGAAGCC GTGCTTGGCG GCCATGCGAT TCGCGCCGCG
CGCATGATCG ACGGCCTGCA GTCCGAAGGC GAGTCCGAAG TGCTGGTGCA CTGGGCGCTG
GCCGAAGACA TCCGCAGCAT GAAACGGGTC AGGGACGCGA TTCAGGCCGG CCGGCCCATG
CCAATGGCGC TGCGCGAAAA CCGCGTCTGG GGCGCAAAGG AAAAACTCTA TGAACGCGTG
CTTCCCGGCA TGAGCGATGC CGCATTGGCG AAACTGCTCG ATGCCGCGCA AAAGGTCGAT
GGCATCGTCA AGGGGCTGAA GCAGCCCGAC TGGCCGACGA GCGGCTGGCA GTCGCTGCAC
CGGCTGGCCG GCATGGTCTG CGAACAGTGC GCGGCGCCGT CGCGGGCTTC GGCTGGCCGC
GCCGGGCCGG GCGGCAGAGG CTAG
|
|---|
| Protein sequence | MQMAPAQLTE HLKRGLKSLY TLHGDEPLLV QEFADALRAA ARQRGYTERT VHTVAGAHFD
WSEVLASGGS LSLFADKQIV EVRIPSGKPG KDGSVALQQL AERAQGDDST LTLVMLPRLD
GATTKGAWFG ALESFGVTVK FEPIDRRTLP QWIAQRLQLQ GQRVANGEEG QRTLQFFADR
VEGNLLAAHQ EIQKLALLYP VTGDGILSFD QVENAVLNVA RYDVFKLSEA VLGGHAIRAA
RMIDGLQSEG ESEVLVHWAL AEDIRSMKRV RDAIQAGRPM PMALRENRVW GAKEKLYERV
LPGMSDAALA KLLDAAQKVD GIVKGLKQPD WPTSGWQSLH RLAGMVCEQC AAPSRASAGR
AGPGGRG
|
|---|
| |