| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3761 |
|---|
| Symbol | |
|---|
| ID | 4690180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 4010342 |
|---|
| End bp | 4014172 |
|---|
| Gene Length | 3831 bp |
|---|
| Protein Length | 1276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836779 |
|---|
| Product | nitrate reductase, alpha subunit |
|---|
| Protein accession | YP_983978 |
|---|
| Protein GI | 121606649 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG5013] Nitrate reductase alpha subunit |
|---|
| TIGRFAM ID | [TIGR01580] respiratory nitrate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACT TTTTGGACCG ATTAAGCCAC TTTTCCAATC CACGGGAAGC GTTCTCGGGC
GACCACGGCG TCACCACGGC CGAAGACCGC ACCTGGGAAG ACGCCTACCG CAACCGCTGG
GCGCACGACA AGATCGTGCG CAGCACCCAC GGCGTGAACT GCACCGGTTC ATGCTCGTGG
AAGATTTATG TCAAGGGCGG CATCGTCACC TGGGAAACCC AGCAGACCGA CTACCCGCGC
ACGCGCTGGG ACATGCCCAA CCACGAGCCG CGCGGCTGCG CACGCGGCGC GAGCTACAGC
TGGTATTTGT ACAGCGCCAA CCGCGTCAAG TACCCGATGA TCCGCGCTAG ATTGCTCAAG
CACTGGCGCG AAGCGCGCCT GACGCTGCCG CCCGTCGAAG CCTGGGCCGC CGTGGTGCAG
AACGACGCCA AGCGCCGCGA CTACCAGAGC GTTCGCGGCC TGGGCGGCTT CGTGCGCTCG
ACGTGGGAAG AGGTCAACGA GCTGATCGCC GCGTCCAACG TCTATACGAT CAAGCAGCAC
GGCGCCGACC GCATCATCGG CTTCTCGCCG ATTCCAGCGA TGTCGATGGT CAGCTATGCC
GCCGGTTCGC GCTACCTTTC CTTGATTGGC GGCGTGTGCA TGAGCTTTTA CGACTGGTAC
TGCGACTTGC CCCCGAGCAG CCCGCAAGTC TGGGGCGAAC AGACCGACGT TCCCGAATCG
GCCGACTGGT ACAACTCCAG CTTCATCATC GCCTGGGGCT CGAACGTGCC GCAGACGCGC
ACACCCGACG CCCACTTCTT CACCGAAGTG CGCTACAAGG GCTGCAAGAC CGTCGCCATC
ACGCCCGACT ATTCGGAAGT CGCCAAGCTG TCGGATTTGT GGATGCACCC CAAGCAGGGC
ACCGACGCCG CCGTCGCCAT GGCGATGGGC CATGTGATTT TGAAAGACTT CTATTTCGGC
GGCAACGGCC AGCCGCGCTC GGCCTATTTC GACGACTATG CGCGCCGCTA CACCGATTTG
CCGATGCTGG TCATGCTGAA AGAGCACACG CTGGAAAACG GTAGTACCGT GCTGGTGCCT
GACCGCTATG TGCGCGCCTC CGACTTCAAC GGCAACCTCG GCCAGGCCAA CAACCCCGAC
TGGAAAACCG TCGCCTTCGA TGCCAGCGGC AAAGTCGTGC TGCCCAATGG CGCCATCGGC
TTTCGCTGGG GACCGGACGG CCGGGCCGAT GAAGGCCAGT GGAACCTGGA AGCCAAGGAA
GCGCGCCACG GTCAGGACGT CAGCCTCAAG CTGTCGGTGA TGGAGGGCGA GCAAGCCAGC
CATGACAGCG CGCAGGTGGG TTTCCCGTAT TTCGGCGGCA TCCACCACGC GCATTTCCCG
AACAACGCGC AGGTCAAGGC GCCGGGCGAC GTGCTGGTGC GCACGGTGCC GGTGCAGCGC
ATTTCACTCG GCAAGGCGGG CGAGGAGCGC TCGGCGCTGG TCGCCACGGT GTTCGATTTG
CAGGCGGCGC AGTACGGCAT TGCGCGCGGC CTGCCCGGCG AACTCGCCGC CAGCGATTTC
AACGACAACA CCCCCTACAC CCCGGCCTGG CAGGAGCAGA TCACCGGCGT GCCGCGCGAC
CAGATCATCA CCGTGGCGCG CCAGTTTGCC GAAAACGCCG ACAAGACGCA GGGCCGCTCG
ATGGTCATCA TCGGCGCGGG CATGAACCAC TGGTACCACA GCGACATGAA CTACCGCAGC
GTCATCAACA TGCTGATGAT GTGCGGCTGC ATCGGCAAGA GCGGCGGCGG CTGGGCGCAT
TACGTGGGCC AGGAAAAGCT GCGCCCGCAG ACCGGCTGGA CGCCGCTGGC CTTCGCGCTC
GACTGGATCC GCCCGCCCAG GCAGATGAAT TCGACCAGCT TTTTCTACGC CCACACCAAC
CAGTGGCGCT ATGAAAAGCT GGGCGTCGAT GAAGTGCTGT CGCCGCTGGC CGACAAGAAG
ATGTATGGCG GCAGCATGAT CGACTACAAC GTGCGCGCCG AGCGCATGGG CTGGCTGCCA
TCCGCGCCGC AACTGCAGAC CAACCCGATG CAGGTCGTGA AGGATGCGCA GGCCGCCGGG
CTCGATGCCA AGGACTACGC CGTCAAGGCG CTGAAGGACG GCTCGCTCAA GATGAGCTGC
GAAGACCCGG ACCATCCGGC CAACTGGCCG CGCAACATGT TCGTCTGGCG CTCCAACATC
ATCGGCTCGT CGGGCAAGGG CCACGAGTAT TTCCTCAAGC ACCTGCTGGG CACCAGCAAC
GGCGTGCAGG GCAAGGATCT GGGCGCCGAA GACGGTAAGC CCGAGGAAGT CGTCTGGCAC
GACAAGGCGC CCGAAGGCAA GCTGGACCTG CTGGTCACGC TCGATTTCCG CATGAGCACG
ACCTGCCTGT ATTCCGACAT CGTGCTGCCG ACCGCCACCT GGTACGAAAA GAACGACCTG
AACACCAGCG ACATGCACCC CTTCATCCAT CCGCTCTCAA CGGCGGTGGA CCCGGTCTGG
CAGTCGAAAA GCGACTGGGA AATCTACAAA GGGTTTGCCA AGAAATTCAG CGAACTGTGC
GACGGCCACC TGGGCGTCGA AAAGGAAATG GTGCTGACCC CGGTGATGCA CGACACGCCG
GGCGAGCTGG CCCAGCCGTT CGAGGTCAAG GACTGGAAGC GCGGCGAGTG CGAGCTGATT
CCGGGCAAGA CGGCGCCGCA GATGCAGGTC GTCGAGCGCG ACTACCCGAA CGTGTACAAG
CGCTTCACGG CCGTCGGCCC GCTGCTCAAC AAGATCGGCA ATGGTGGCAA GGGCATTTCG
TGGAACACGC AAATCGAAGT CACGCAGCTC GGCCAGCTGA ACGGCCTGGT GACCGAGCCC
GGCGTGACGC AAGGAATGCC GCGCATCAAC AGCGACATCG ACGCCTGCGA AATGGTGCTG
CAGCTCGCGC CGGAAACCAA CGGCCATGTC GCCGTGAAGG CGTGGGAAGC ATTGGGCAAG
CAGACCGGCC GCGACCACAC GCATCTGGCG ATGCACCGCG AAGACGAGAA AATCCGTTTC
CGCGACATCC AGGCGCAGCC GCGCAAGATC ATCAGCTCGC CGACCTGGAG CGGGATCGAG
TCCGAAACCG TGTCGTACAA CGCCGGCTAC ACCAACGTGC ATGAATACAT CCCGTGGCGC
ACGCTGACCG GCCGCCAGCA GTTCTACCAG GACCACCCGT GGATGCTGGC CTTCGGCGAA
GGCTTTGCCA GCTACCGTCC GCCGGTGAAT TTGAAGGCGA CGGCGGGCGT GCACGGCATC
CGTTCCAACG GCAACGCCGA AATCCTGCTG AACTTCATCA CGCCGCACCA GAAATGGGGC
ATTCACTCGA CTTACACCGA CAACCTGATC ATGCTCACCC TGAGCCGGGG CGGCCCGATC
ATCTGGCTCA GCGAGGACGA CGCCAAGCTG ATCGGCGTGC AGGACAACGA CTGGATCGAA
GCCTACAACG TCAACGGCGC GATTGCGGCG CGGGCGGTGG TCAGCCAGCG CGTCAAGCCC
GGCATGGTGC TGATGTACCA CGCGCAGGAA AAGATCGTCA ACACGCCCGG CTCGGAAATC
ACCGGCCAGC GCGGCGGCAT CCACAACTCG GTGACGCGCA TTGTGCTGAA ACCCACGCAC
ATGATCGGCG GCTACGCGCA GCTGAGCTAC GGCTTCAACT ACTACGGAAC CATTGGCACG
AACCGCGACG AATTCGTCGT GGTGCGCAAG ATGGACAAGA TCGACTGGCT CGACACGCCC
ACCGATGACG AATACGTCGC GGCCGTGCGC AAAATGGGAG AAACGGTATG A
|
|---|
| Protein sequence | MSHFLDRLSH FSNPREAFSG DHGVTTAEDR TWEDAYRNRW AHDKIVRSTH GVNCTGSCSW
KIYVKGGIVT WETQQTDYPR TRWDMPNHEP RGCARGASYS WYLYSANRVK YPMIRARLLK
HWREARLTLP PVEAWAAVVQ NDAKRRDYQS VRGLGGFVRS TWEEVNELIA ASNVYTIKQH
GADRIIGFSP IPAMSMVSYA AGSRYLSLIG GVCMSFYDWY CDLPPSSPQV WGEQTDVPES
ADWYNSSFII AWGSNVPQTR TPDAHFFTEV RYKGCKTVAI TPDYSEVAKL SDLWMHPKQG
TDAAVAMAMG HVILKDFYFG GNGQPRSAYF DDYARRYTDL PMLVMLKEHT LENGSTVLVP
DRYVRASDFN GNLGQANNPD WKTVAFDASG KVVLPNGAIG FRWGPDGRAD EGQWNLEAKE
ARHGQDVSLK LSVMEGEQAS HDSAQVGFPY FGGIHHAHFP NNAQVKAPGD VLVRTVPVQR
ISLGKAGEER SALVATVFDL QAAQYGIARG LPGELAASDF NDNTPYTPAW QEQITGVPRD
QIITVARQFA ENADKTQGRS MVIIGAGMNH WYHSDMNYRS VINMLMMCGC IGKSGGGWAH
YVGQEKLRPQ TGWTPLAFAL DWIRPPRQMN STSFFYAHTN QWRYEKLGVD EVLSPLADKK
MYGGSMIDYN VRAERMGWLP SAPQLQTNPM QVVKDAQAAG LDAKDYAVKA LKDGSLKMSC
EDPDHPANWP RNMFVWRSNI IGSSGKGHEY FLKHLLGTSN GVQGKDLGAE DGKPEEVVWH
DKAPEGKLDL LVTLDFRMST TCLYSDIVLP TATWYEKNDL NTSDMHPFIH PLSTAVDPVW
QSKSDWEIYK GFAKKFSELC DGHLGVEKEM VLTPVMHDTP GELAQPFEVK DWKRGECELI
PGKTAPQMQV VERDYPNVYK RFTAVGPLLN KIGNGGKGIS WNTQIEVTQL GQLNGLVTEP
GVTQGMPRIN SDIDACEMVL QLAPETNGHV AVKAWEALGK QTGRDHTHLA MHREDEKIRF
RDIQAQPRKI ISSPTWSGIE SETVSYNAGY TNVHEYIPWR TLTGRQQFYQ DHPWMLAFGE
GFASYRPPVN LKATAGVHGI RSNGNAEILL NFITPHQKWG IHSTYTDNLI MLTLSRGGPI
IWLSEDDAKL IGVQDNDWIE AYNVNGAIAA RAVVSQRVKP GMVLMYHAQE KIVNTPGSEI
TGQRGGIHNS VTRIVLKPTH MIGGYAQLSY GFNYYGTIGT NRDEFVVVRK MDKIDWLDTP
TDDEYVAAVR KMGETV
|
|---|
| |