| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3760 |
|---|
| Symbol | |
|---|
| ID | 4690062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 4008813 |
|---|
| End bp | 4010345 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836778 |
|---|
| Product | nitrate reductase, beta subunit |
|---|
| Protein accession | YP_983977 |
|---|
| Protein GI | 121606648 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1140] Nitrate reductase beta subunit |
|---|
| TIGRFAM ID | [TIGR01660] nitrate reductase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.281422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTAC GCGCACAAAT CGGCATGGTG CTGAACCTGG ACAAGTGCAT CGGGTGCCAC
ACCTGCTCGG TCACCTGCAA GAACGTCTGG ACCAGCCGCC CCGGCATGGA ATACGCCTGG
TTCAACAACG TCGAGACCAA GCCCGGCATC GGTTACCCCA AGGAGTGGGA AAACCAGGAC
AAGTGGAACG GCGGCTGGAT TCGCAACGCC GACGGCTCCA TCGAGCCGCG CCAGGGCGGC
AAGTGGAAGA TGCTGATGCG CCTGTTCGCC AACCCGAACA TGCCGCAGAT CGACGATTAC
TACGAGCCCT TCACCTTCGA CTACGCGCAT CTGCAGGCCG CGCCCGAGAT GAAGGCCACG
CCAACGGCCC GCCCGCGCAG CCTGATCACG GGCCAGCGCA TGGAAAAGAT CGAATGGGGT
CCGAACTGGG AAGAAATCCT GGGCGGCGAG TTTTCCAAGC GCAGCAAGGA TGCGAACCTG
GACAACTTCG ACCAGGTGCA AAAGGACATG GTCGGCCAGT TCGAAAACAC CTTCATGATG
TATTTGCCGC GCCTGTGCGA GCACTGCCTG AACCCGGCCT GCGTGGCCTC GTGCCCGTCG
GGCTCGATCT ACAAGCGGGA AGAAGACGGC ATCGTGCTGA TCGACCAGGA CAAGTGCCGG
GGCTGGCGCA TGTGCGTCTC GGGCTGCCCG TACAAGAAAA TCTACTACAA CTGGAAGAGC
GGCAAGGCCG AGAAATGCAC CTTCTGCTAC CCGCGCATCG AGGCCGGCCA GCCGACCGTG
TGCAGCGAAA CCTGCGTCGG CCGCATCCGC TACCTCGGCG TGATTCTGTA TGACGCCGAC
CGCATCCAGG AAGCGGCCAG CGTGGAAAAC GACAAGGATC TGTACCAGGC CCAGCTCGAC
ATCTTCCTGG ACCCGAACGA TCCGGCCGTG ATTGCCCAGG CCCGCCTGGA CGGCATTCCC
GAAGCCTGGC TCGAAGGCGC GCGCAAGAGC CCGGTGTACA AGATGGCCGT CGAGTGGAAG
GTGGCGCTGC CGCTGCACCC CGAATACCGC ACGCTGCCCA TGGTCTGGTA TGTGCCGCCG
CTCTCGCCCA TCACGTCGGC CGCCAACGCC GGCCATATCG GCATCAACGG CGAGCTGCCC
GACATTGCCC AGATGCGCAT TCCGGTGCAG TACCTGGCCA ATTTGCTGAC GGCAGGCGAC
ACCGCACCGG TGATCCGTTC GCTGCAGCGC ATGCTGGCGA TGCGCTCCTA CCAGCGCAGC
AAGCATGTGG ACAACGAGCA GAACCTGGCC GTGCTGGCGC AAGCGGGCCT GACGGTGGCC
GAGGTCGAGG AGATGTACCA CATCATGGCG ATTGCCAACT ACGAAGACCG CTTCGTGATT
CCGACCACGC ACCGCGAATA CGCCGAAAAC GCCTTCGACA TGCGCGGCGG CTGCGGCTTT
ACCTTCGGCA ACGGCTGCTC CGACGGCGCC AGCGAGGTCA GCCTGTTCGG CGGCAGCAAG
AAACGCACTA TTCCCATCAA GGTGGAGGTC TGA
|
|---|
| Protein sequence | MKVRAQIGMV LNLDKCIGCH TCSVTCKNVW TSRPGMEYAW FNNVETKPGI GYPKEWENQD
KWNGGWIRNA DGSIEPRQGG KWKMLMRLFA NPNMPQIDDY YEPFTFDYAH LQAAPEMKAT
PTARPRSLIT GQRMEKIEWG PNWEEILGGE FSKRSKDANL DNFDQVQKDM VGQFENTFMM
YLPRLCEHCL NPACVASCPS GSIYKREEDG IVLIDQDKCR GWRMCVSGCP YKKIYYNWKS
GKAEKCTFCY PRIEAGQPTV CSETCVGRIR YLGVILYDAD RIQEAASVEN DKDLYQAQLD
IFLDPNDPAV IAQARLDGIP EAWLEGARKS PVYKMAVEWK VALPLHPEYR TLPMVWYVPP
LSPITSAANA GHIGINGELP DIAQMRIPVQ YLANLLTAGD TAPVIRSLQR MLAMRSYQRS
KHVDNEQNLA VLAQAGLTVA EVEEMYHIMA IANYEDRFVI PTTHREYAEN AFDMRGGCGF
TFGNGCSDGA SEVSLFGGSK KRTIPIKVEV
|
|---|
| |