| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3676 |
|---|
| Symbol | |
|---|
| ID | 4686244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3908012 |
|---|
| End bp | 3910912 |
|---|
| Gene Length | 2901 bp |
|---|
| Protein Length | 966 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639836694 |
|---|
| Product | putative chaperone protein, HscA/DnaK |
|---|
| Protein accession | YP_983893 |
|---|
| Protein GI | 121606564 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0443] Molecular chaperone |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.771726 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACTGACA ACCTGAAGAT TGAATTGAAG CGCCAAACCC TGATGAGCCA CTACATCGTC
GGCATCGACC TGGGCACCAC CCACACCGTC GTCGCCTATG CGCCGCTGGC GTCGGGGCAG
GGCGGGCCGG CCGGGCCGGC CGACATCCGC CTGTTCGACA TCGAGCAACT GGTCGCGCCC
GGTGAAGTCG CCGCGCGGCC GCTGCTGCCT TCGGTGCGCT ACCACGCGGC ACCGGGCGAA
CTGGATCCGG CCGCGCTGCA ATTGCCCTGG CCTGCGGAGC CTGAATCCGG CCCGGCGACC
GTGGTGTTCG GCGAGCTGGC GCGCAAGCTG GGCGCGCAGG TGCCGGGCCG GCTGGTGGCC
AGCGCCAAAA GCTGGCTGTC GCATGCGGCG GTGGACCGGC TCGCGCCCAT CCTGCCCTGG
GGCGCGCCTG ACGATGTGGC CAAAGTCTCG CCCGTCGAGG CCAGCGCCAG CTACCTGCGC
TATGTCCGGC AGGCCTGGAA CGCGCGCTTT CCGAACAGCC CGCTGGAGCG GCAGGAACTG
GTGCTGACCG TGCCGGCGTC CTTCGACGAA GGCGCCCGCG CGCTGACGCT GAGCGCCGCG
CGCCTGGCCG GCCTGCCCAG GCTGCGCCTG CTCGAAGAGC CGCAGGCGGT GTTCTACGAC
TGGCTGCTGC GCCACCGCCA CCAGTTGGCC GGGGCGCTGG GACAAACCCG GCGCGTGCTG
GTCTGCGATG TCGGCGGCGG CACCACCGAC CTCAGCCTGA TCGAGGTCGA ATGGGCCGGT
GGCCAGCCGC AACTGACCCG CATCGGCGTG GGCAACCACC TGATGCTGGG CGGCGACAAC
ATGGACCTGG CGCTGGCGCA TGCGGTCGAA TCCCGCATGG GCGGCACGGC GGGTGCGCCT
GCCGCGCCGC TGTCGGCCAG CCGGCTGGCG CAGCTGATGG ACCGCTGCCG CGCCGCCAAG
GAACTGCTGC TGGCCGCCGA CGCGCCCGAA CAGGCGCCGG TCACGCTGCT GGGCGGCGGC
GCCCGGCTGA TTGGCGGCAG CCGCTCGGTG ATGCTGGCGC GCGAAGAGGT CGAGCGTCTC
ATCGTTGACG GTTTTTTCCC GCAGGTGGAT GCCGGCGCGC AGGTGCAGCA GGCGCGCAGC
GGCATCGTCG CCTTCGGCCT GCCGTATGCG CGCGACGCGG CCATCACCCG CCACATCGCC
GACTTTTTGC GCCAGCACGG GCCGCAGATG CCCGCTGCTC TGCTGCTCAA TGGCGGCGTG
TTTCGCGCCG ACGCGCTGGT CCGGCGGCTG GCGCAGACGC TGGGCGGCTG GCGCGGCGAG
CCGTTGCGCC TGCTGCACAA CGACAACCCC GACGTGGCCG TGGCGCGCGG CGCGGTGGCT
TACGCCTTGT CGCAAAAGGG CCAGGCGCCG CGCATCGGCG GCGGCTCGGC GCGCAGCTAC
TTTTTGCGCC TCGATGATTC AAGAGGCTCG GCGAAGGCAC GCGGCATCTG CATCCTGCCG
CGCGGCAGCG AACCGGGCCA GGAAATGCTG CTGAAAGACC GCAGCTTTTC CCTGCGCGTC
GGCCAGCCGG TGCGCTTCCA GCTGTTCAGC GCGGTGGCCG ACGAGGCCGG CCAGGCGCCG
TCCCGGCTCG GTGAACTGGT CACGCTGAAC GAGGACGCGC TGGTGCGCCT GCCGCCCCTC
GTGATGGTGC TGCAGGCCGC GCCTGGCGCT GCGGCCAGCG GCCAGCCAGC GCCGAGCCGG
CAGGACATCC CGGTGCAACT GGCCACCTCG CTGACCGAGG TTGGCACACT GGAGCTGCAC
TGCGTCAGCC TGCTGGATGC CGGCCAGCGC TGGCTGCTGG CATTTGCCCT GCGCCAGCCC
GATGCCGACG CCGCCGGCCC GCGCAGCCCC GAAGACCGCC GGCTGGCCGC CCGCATGACG
GACGCCATCA GCCAGATCGA CCGCATTTTT GGCACCAACA AGCAGCAGGT CAGCCCCAAG
GACGTGACGC AGCTGCGCGC GCAGCTGGAG CGCCTGCTCG GCGACCGCGC GCAATGGACC
ACGCCGGTGC TGCGCCAGCT GTTCGATGCC TTGTGGCAGC GCGCGCGCGG GCGGCGGCGC
AGCGCCGAGC ATGAACGGGT CTGGCTGAAT CTGGCCGGTT ACGGCCTGCG CCCGGGCTTT
GGCGATGCGC TCGACGCCTG GCGGGTGCAG CAGCTCTGGA CCTTGTTTGC GCCCGGCGTG
CAGCATGTCA ATGACAAGCA GGTGGGCGCC GAATGGTGGA CGCTGTGGCG GCGCGTGGCC
GGCGGGCTGG ACGTGCCCTC ACAGCTGCGC CTGCTCGATG ACTTCGCCTT CAACCTGCAG
ATCAGCGAAG AGGGCGCCGA CGGGTTCGAG GGCGCCAAGC CGGTCAAGGG CAGTTTGGGC
GACATGCTGC GCCTGGGCGC TTCGCTGGAG CGCATCCCGG CCGCCTACAA GACCGAGATC
GGCGAATGGC TGCTCGGCCG GCTGCAAAAA TCCACCGCAG CGCCGCCGCC GGGCCAGCGC
GCGGGCCATG ACGGCAGCGG CGACGACAGC CTGTATCTAT GGGCGCTGGG CCGCATCGGC
GCGCGCGAGC CCTTCCACGG CAGCCCGCAT GACGTGGTTC CGCCCGAGAC GGCGGCGGCT
TGGGTTGAAA GCCTGCTGGC GCTCGACTGG AAGCGCATCG AGGCCGCCGC CTTCGCCGCC
GTCAACCTGG CGCGCGTGAC CGACGACCGC GCCCGGGACT TGCCGCTGGC CCTGCGCGAG
CAGCTCATGG CGCGGCTCAG GGCCATCCAC GCGCCTGCGG CCTGGGTTGC CATGGTGGAA
AAAAAGGTGG AACTCGACGC GGCTACCGAG CGCCGCATGC TGGGCGAGTC GCTGCCGCCG
GGGCTGAAAT TGATGGCGTG A
|
|---|
| Protein sequence | MTDNLKIELK RQTLMSHYIV GIDLGTTHTV VAYAPLASGQ GGPAGPADIR LFDIEQLVAP
GEVAARPLLP SVRYHAAPGE LDPAALQLPW PAEPESGPAT VVFGELARKL GAQVPGRLVA
SAKSWLSHAA VDRLAPILPW GAPDDVAKVS PVEASASYLR YVRQAWNARF PNSPLERQEL
VLTVPASFDE GARALTLSAA RLAGLPRLRL LEEPQAVFYD WLLRHRHQLA GALGQTRRVL
VCDVGGGTTD LSLIEVEWAG GQPQLTRIGV GNHLMLGGDN MDLALAHAVE SRMGGTAGAP
AAPLSASRLA QLMDRCRAAK ELLLAADAPE QAPVTLLGGG ARLIGGSRSV MLAREEVERL
IVDGFFPQVD AGAQVQQARS GIVAFGLPYA RDAAITRHIA DFLRQHGPQM PAALLLNGGV
FRADALVRRL AQTLGGWRGE PLRLLHNDNP DVAVARGAVA YALSQKGQAP RIGGGSARSY
FLRLDDSRGS AKARGICILP RGSEPGQEML LKDRSFSLRV GQPVRFQLFS AVADEAGQAP
SRLGELVTLN EDALVRLPPL VMVLQAAPGA AASGQPAPSR QDIPVQLATS LTEVGTLELH
CVSLLDAGQR WLLAFALRQP DADAAGPRSP EDRRLAARMT DAISQIDRIF GTNKQQVSPK
DVTQLRAQLE RLLGDRAQWT TPVLRQLFDA LWQRARGRRR SAEHERVWLN LAGYGLRPGF
GDALDAWRVQ QLWTLFAPGV QHVNDKQVGA EWWTLWRRVA GGLDVPSQLR LLDDFAFNLQ
ISEEGADGFE GAKPVKGSLG DMLRLGASLE RIPAAYKTEI GEWLLGRLQK STAAPPPGQR
AGHDGSGDDS LYLWALGRIG AREPFHGSPH DVVPPETAAA WVESLLALDW KRIEAAAFAA
VNLARVTDDR ARDLPLALRE QLMARLRAIH APAAWVAMVE KKVELDAATE RRMLGESLPP
GLKLMA
|
|---|
| |