| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3670 |
|---|
| Symbol | |
|---|
| ID | 4687225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3902406 |
|---|
| End bp | 3903191 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639836688 |
|---|
| Product | spermidine synthase-like protein |
|---|
| Protein accession | YP_983887 |
|---|
| Protein GI | 121606558 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATA AGCCGGCGCT GCCGGGCGAT TTCCGGTCGC TGCAGTATGT CAAGCCTTTC
GTGCTCGACG ACGGCGCGTC GAAGTCGCTG CATTTCACCC GGGGCGAGCT GCAAAGCCGC
ATGCTCACGC ACAGCCCCTG GCGGCTGGAG GTGGACTACA CCCGCACCAT GATGGGCTTT
TTGCTGTTCG ACCCGGCACC CGCGCACATC GGCATGATCG GCCTGGGCGG CGGCTCGATT
GCCAAGTTCT GTCACCGCTT CCTGCCGGCC AGCCGCATGA CGGTGCTGGA GATCAACCCC
TATGTGCTGG CGCTGCGCCA TGACTTCCAG GTGCCCGACG ACGGCGAGCG CTTCCAGGTG
ATTGCCGCCG ATGGCGCGAT GTACCTGCAC ACCGAATCGC CACGGTTCGA CGTGCTGCTG
GTCGATGGCT TTGACCACGA GGGCCAGCCC GCCGCGCTGT GCACCCAGCG CTTTTACGAC
GACTGTTTCG CCGCGCTGCC GGCCGGCGGC GTGCTGGCGG TCAACCTGCA CTACGAGCAC
CCCGACTACC CGCTGCTGCT GGCGCGCATC AGCCGCAGCT TCAGCGGCAA TGCGGTCGAA
ATCATCACGG CTGAACAGAG CAACAGCATC GTGTTCGCCC GAAAAGGCCC GCCCATCTCG
CCGCGCGCCC TGAGCCTGCC GGCCAGCCTG GCCGGGCTGG ACGCCGAGGC GCGCGCGCAG
CTCAGGCCCG AACTGGCGCG CATGCTCTGG CTGATGAAAA ACCTGGGCCT GGAGGGCGAC
GCGTAG
|
|---|
| Protein sequence | MPDKPALPGD FRSLQYVKPF VLDDGASKSL HFTRGELQSR MLTHSPWRLE VDYTRTMMGF
LLFDPAPAHI GMIGLGGGSI AKFCHRFLPA SRMTVLEINP YVLALRHDFQ VPDDGERFQV
IAADGAMYLH TESPRFDVLL VDGFDHEGQP AALCTQRFYD DCFAALPAGG VLAVNLHYEH
PDYPLLLARI SRSFSGNAVE IITAEQSNSI VFARKGPPIS PRALSLPASL AGLDAEARAQ
LRPELARMLW LMKNLGLEGD A
|
|---|
| |