Gene Pnap_3647 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3647 
Symbol 
ID4688893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3881983 
End bp3883173 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content62% 
IMG OID639836662 
Productelongation factor Tu 
Protein accessionYP_983864 
Protein GI121606535 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0050] GTPases - translation elongation factors 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAAG AGAAATTTTC GCGGACCAAG CCGCACGTAA ACGTCGGCAC GATTGGCCAC 
GTTGACCATG GCAAGACCAC GCTGACGGCA GCGATTGCGA CCGTGCTGGC CGCCAAGTTC
GGCGGCGAAG CCAAGGCGTA CGACCAGATC GACGCGGCGC CCGAAGAAAA AGCGCGCGGC
ATCACCATCA ACACCGCCCA CGTCGAATAC GAAACGGCTG CCCGCCACTA CGCCCACGTT
GACTGCCCGG GCCACGCCGA CTATGTGAAG AACATGATCA CGGGCGCTGC GCAGATGGAC
GGCGCCATTT TGGTCTGCTC GGCCGCTGAC GGCCCGATGC CCCAGACCCG CGAGCACATC
CTGCTGGCCC GCCAGGTGGG CGTGCCTTAC ATCATCGTGT TCCTGAACAA GTGCGACATG
GTCGATGACG CCGAACTGCT CGAACTCGTC GAGATGGAAG TGCGCGAGCT GCTCGACAAG
TACGATTTCC CTGGCGACGA CACCCCCATC ATCCACGGCT CGGCCAAGCT CGCGCTCGAA
GGCGACAAGG GTCCGCTGGG CGAAGAAGCC ATCATGAAGC TGGCCGACGC ACTGGACAAC
TACATTCCCC TGCCAGAGCG CGCTGTTGAC GGCGCCTTCC TGATGCCCGT GGAAGACGTG
TTCTCCATCT CCGGCCGCGG CACCGTCGTG ACCGGCCGTA TCGAGCGCGG CATCATCAAG
GTCGGCGAAG AAATCGAGAT CGTCGGTATC GCTGACACGC AAAAGACCAT CTGCACCGGC
GTGGAAATGT TCCGCAAGCT GCTCGACCAG GGCCAGGCTG GCGACAACGT CGGTATCCTG
CTGCGCGGCA CCAAGCGCGA AGACGTGCAG CGCGGCCAGG TGCTGTGCAA GCCCGGCTCG
ATCAAGCCGC ACACGCACTT CACCGGCGAG ATCTATGTCC TGTCGAAAGA CGAAGGCGGC
CGTCACACGC CTTTCTTCAA CAACTACCGT CCCCAGTTCT ACTTCCGCAC GACGGACGTG
ACCGGCGCGA TCGAGTTGCC AGAAGGCAAG GAAATGGTCA TGCCCGGCGA CAACGTGTCG
ATCACCGTCA AGCTGATCAA CCCGATTGCC ATGGAAGAAG GCCTGCGCTT CGCCATCCGC
GAAGGCGGCC GTACCGTGGG CGCTGGCGTT GTGGCCAAGA TCCTCGCGTA A
 
Protein sequence
MAKEKFSRTK PHVNVGTIGH VDHGKTTLTA AIATVLAAKF GGEAKAYDQI DAAPEEKARG 
ITINTAHVEY ETAARHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI
LLARQVGVPY IIVFLNKCDM VDDAELLELV EMEVRELLDK YDFPGDDTPI IHGSAKLALE
GDKGPLGEEA IMKLADALDN YIPLPERAVD GAFLMPVEDV FSISGRGTVV TGRIERGIIK
VGEEIEIVGI ADTQKTICTG VEMFRKLLDQ GQAGDNVGIL LRGTKREDVQ RGQVLCKPGS
IKPHTHFTGE IYVLSKDEGG RHTPFFNNYR PQFYFRTTDV TGAIELPEGK EMVMPGDNVS
ITVKLINPIA MEEGLRFAIR EGGRTVGAGV VAKILA