| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3643 |
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| Symbol | rplA |
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| ID | 4689292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3879473 |
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| End bp | 3880168 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639836657 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_983860 |
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| Protein GI | 121606531 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.301013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCAAGC TGACCAAACG TCAAAAAACC GTCGGCGACA AGATCGACAG CAACAAGCTG
TACGCACTGT CTGACGCACT GGGCCTTGTC AAAGAGTTCG CTGTCGCCAA GTTCGATGAG
TCCATCGACG TGGCCGTGCA ACTCGGTATC GATGCCAAGA AATCTGACCA GGTTGTTCGC
GGCGCTGTCG TGCTGCCAAA CGGCACCGGT AAAACCAAGC GTGTCGCTGT GTTCGCCCAA
GGTGCCAAGG CTGAAGAAGC CAAGGCTGCC GGTGCAGACA TCGTTGGCAT GGATGATCTG
GCTGCCGACA TCAAGGCCGG CAAGATGGAC TTCGACGTCG TGATTGCTTC CCCTGATGCG
ATGCGCATCG TCGGTACGCT GGGCCAGATC CTCGGCCCAC GCGGTCTGAT GCCTAACCCC
AAGGTCGGCA CGGTGACGCC TGACGTCGCG ACCGCTGTGC GCAATGCAAA AGCTGGCCAG
GTCCAGTTCC GCGTTGACAA GGCCGGTATT GTGCATGGCA CCATCGGTCG CCGTTCGTTC
GACACCGCCA AGCTGCAAGG CAATCTGGCT GCATTGGTTG ACGCGCTGAT CAAGGCCAAG
CCTGCTACCA GCAAGGGCGT GTACTTGAAG AAAGTCGCTG TTTCATCAAC GATGGGCGTG
GGCGTTCGCG TCGATACGCA ATCCATCGCG GCTTGA
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| Protein sequence | MSKLTKRQKT VGDKIDSNKL YALSDALGLV KEFAVAKFDE SIDVAVQLGI DAKKSDQVVR
GAVVLPNGTG KTKRVAVFAQ GAKAEEAKAA GADIVGMDDL AADIKAGKMD FDVVIASPDA
MRIVGTLGQI LGPRGLMPNP KVGTVTPDVA TAVRNAKAGQ VQFRVDKAGI VHGTIGRRSF
DTAKLQGNLA ALVDALIKAK PATSKGVYLK KVAVSSTMGV GVRVDTQSIA A
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