| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3640 |
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| Symbol | rpoB |
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| ID | 4688631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3873748 |
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| End bp | 3877860 |
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| Gene Length | 4113 bp |
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| Protein Length | 1370 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639836654 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_983857 |
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| Protein GI | 121606528 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0476328 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTATT CCTTCACCGA ACGTAAACGC ATCCGCAAAA GCTTCGGCAA CCGCGAAAGC
GTGTTGACTG TTCCCTATTT ACTGCAAATG CAGAAAGATG CGTACATCGC ATTCCTGCAA
GCCGACCGTG CGCCCCAAAA ACGCATGGTT GAAGGCCTTC AGGCGGCCTT TCAAAACGCT
TTTCCTATCG TCTCGCACAA CGGTTTTGTC GAGATGAAGT TCATCGAGTA CAACCTGGCC
AAGCCCGCAT TCGACGTGCG TGAGTGCCAG ACACGTGGAC TGACCTTTGC TTCGGCCGTT
CGCGCCAAGG TACAACTGAT CATCTATGAC CGCGAGTCCT CGACGTCGCA GTCCAAGGTC
GTGAAGGAAG TCAAGGAGCA GGAAGTCTAT ATGGGCGAAG TGCCGCTCAT GACAGACAAA
GGCTCTTTCG TCATTAACGG CACCGAGCGC GTCATCGTGT CCCAGTTGCA CCGTTCGCCA
GGCGTGTTTT TCGAGCACGA CAAGGGAAAG ACCCACAGCT CGGGCAAATT GCTGTTTTCG
GCCCGCATCA TTCCTTACCG TGGTTCATGG CTGGACTTCG AGTTTGACCC GAAAGACATC
CTGTACTTCC GCGTGGACCG TCGCCGCAAG ATGCCGGTCA CGATTTTGCT CAAGGCCATC
GGCCTGAACC ACGAATCAAT CCTGGCGAAC TTCTTTGTTT TCGACAATTT CCGCCTGATG
GACAGCGGCG CGCAAATGGA GTTCGTCGCC GAGCGCATGC GCGGCGAAGT CGCCCGTTTC
GACCTGACCG ACAAGGCCGG CAAGGTCGTC GTCGCCAAGG ACAAGCGCAT CACGGTTCGC
CATACCCGCG AACTGGAGCA AAGCGGCACC ACCAGCATCA GCGTGCCGGA AGATTTCCTG
ATCGGCCGCG TGGTCGCCAA GAACATCATC GACACCGATA CGGGTGAAAT CATTGCCAAG
GCCAATGATG AACTGACCGA ACTACTGCTG AAAAAGCTGC GTACGGCCGG CATCCAGAAC
CTGCAGGTGT TGTACACGAA TGAGCTTGAC CAGGGCGCGT ACATTTCGCA AACCCTGCGC
GCCGACGAAA CGGCCGACGA GTTTGCAGCG CGCGTGGCCA TCTACCGCAT GATGCGTCCC
GGCGAGCCGC CAACCGAAGA TGCGGTTCAG GCCCTGTTCC AGCGCCTGTT CTACAACCCG
GACACCTACG ACCTGTCGCG CGTGGGCCGC ATGAAGTTCA ACGCCCGCGT GGGCCGTGAC
GAATCCACCG GCCCGATGGT CATGACCAAC GAGGACATCC TCGCGGTCGT CAAGATCCTG
GTCGATTTGC GCAATGGCAA CGGCGAAGTC GATGACATTG ACCACCTCGG CAACCGCCGG
GTGCGCTGTG TCGGCGAACT CGCTGAAAAC CAGTACCGCA CCGGTCTGGC GCGTATCGAA
AAGGCCGTCA AGGAGCGTCT GGGCCAGGCC GAGCAAGAGC CGCTCATGCC GCACGACCTG
ATCAACAGCA AGCCGATTTC GGCCGCGCTG AAGGAATTCT TCGGTGCATC GCAGCTGTCG
CAGTTCATGG ACCAGACCAA TCCGCTGGCC GAAATCACCC ACAAGCGCCG TGTTTCAGCC
CTTGGCCCCG GTGGCTTGAC GCGTGAACGC GCCGGCTTTG AAGTGCGTGA CGTGCATGTG
ACCCATTACG GTCGCGTCTG CCCGATTGAA ACGCCTGAAG GTCCGAACAT CGGCCTGATC
AACTCGCTGG CTTTGTACGC CCGCCTGAAC GAATACGGCT TCATCGAAAC GCCGTACCGC
CGCGTGGCTG ACAGCAAGGT GACGATGGAA ATCGACTACC TGTCGGCCAT CGAAGAAGGC
AAGTATGTGA TTGCCCAGGC CAATGCCGCG CTGGACAACG AAGGCCGCCT GACCGGCGAC
CTCGTGTCGG CCCGTGAAAA AGGCGAATCC ATTTTGGTCA GCGCCGAGCG CGTGCAGTAC
ATGGACGTGT CGCCGGCGCA GATCGTGTCG GTGGCGGCTT CGCTGGTTCC GTTCCTGGAG
CATGACGATG CCAACCGCGC GCTGATGGGC GCCAACATGT CGCGTCAGGC CGTGCCCGTG
CTGCGTCCGG AAAAGCCGCT CGTCGGCACC GGCATCGAGC GCGTGGCGGC AGTGGACTCG
GGTACGGTCG TGACCGCCAC CCGTGGCGGC GTGGTGGACT ATGTCGATGC GACCCGCATC
GTGGTGCGCG TCAATGATGC AGAAGCTCTG GCTGGCGAAA TCGGCGTGGA CATCTACAAC
CTGATCAAGT ACCAGCGTTC CAACCAGAAC ACTAACATCC ACCAGCGCCC CATCGTCAAG
ATGGGCGACA AGCTGGCCAA GGGTGACGTG GTGGCTGACG GCGCATCAAC TGACCTGGGC
GAAATCGCCA TTGGCCAGAA CATGCTGATC GGCTTCATGC CCTGGAACGG TTACAACTTC
GAGGATTCGA TCCTGATTTC CGAGCGCGTG GTGGCCGAAG ACCGCTACAC CTCGATTCAT
ATCGAAGAAC TCGTCGTGAT GGCGCGCGAC ACCAAACTGG GTTCCGAAGA AATCACCCGC
GACATCCCGA ACCTGTCCGA GCAGCAGCTC AACCGTCTGG ACGAATCCGG CATTATTTAT
GTCGGCGCCG AAGTCCAGCC GGGCGACACG CTGGTCGGTA AGGTCACGCC AAAAGGCGAG
ACCACGCTGA CGCCGGAAGA AAAATTGCTG CGCGCCATCT TCGGCGAAAA AGCCAGCGAT
GTGAAAGACA CCTCGCTGCG CGTCAGCCAG GGCTCGTCGG GCACCGTGAT TGACGTGCAG
GTCTTCACCC GTGAAGGCAT CACCCGCGAC AAGCGTGCCC AGCAGATCAT CGACGACGAA
CTCAAGCGCT ACCGCCTGGA CCTGAATGAC CAGTTGCGGA TTGTGGAAGC CGATGCGTTT
GACCGTATCG AAAAGCTGCT GATCGGCAAG ATCGCCAATG GCGGTCCGAA AAAGCTCGCC
AAGGGCACGA AACTCGACAA GGCCTACCTG ACCGACGTCG AGAAGTACCA CTGGTTTGAC
ATCCGTCCTG CCGATGACGA AGTCGCTTCA CAGCTGGAAA GCATCAAGAA CTCGATGGAG
CAGACGCGCC ATAGTTTCGA CTTGTCTTTC GAGGAAAAGC GCAAGAAGCT GACGCAGGGC
GACGAGTTGC CTTCCGGCGT GCTCAAGATG GTCAAAGTGT ACCTGGCCGT CAAGCGCCGC
CTGCAGCCCG GCGACAAGAT GGCCGGCCGT CACGGCAACA AGGGTGTGGT GTCCAAGATC
GTTCCGGTCG AAGACATGCC CCACATGGCC GACGGCACGC CGTGCGACAT CGTGCTCAAC
CCGCTGGGCG TGCCATCGCG CATGAACGTC GGTCAGGTGC TTGAAGTCCA TCTGGGCTGG
GCCGCCAAGG GTCTGGGCCA GCGGATTGGC GACATGCTGC AGGCCGAGTC CAAGGTGGCC
GAGCTGCGTC AGTTCATGGA CACGCTCTAC AACAAGTCGG GCCGCACGGA AGACCTGGCT
TCGCTGTCGG ACGAGCAGGT CGTCGAGATG GCCCAGAACC TGACCACGGG CGTGCCATTT
GCCACGCCGG TGTTTGACGG TGCCTCCGAA GCCGACATCA TGACCATGCT GCAACTGGCT
TACCCCGATG CAGTTGCCAA GGCCAAGGGC CTGACGCCGA CGCGCACGCA AGCCCAGCTG
TATGACGGCC GCACCGGCGA TGCGTTTGAA CGCACGACGA CGGTCGGCTA CATGCACTTC
CTGAAACTTC ACCACTTGGT GGACGACAAG ATGCATGCCC GCTCGACCGG TCCTTACAGC
CTGGTCACGC AGCAGCCGCT GGGCGGCAAG GCCCAGTTCG GTGGCCAGCG TTTCGGCGAA
ATGGAAGTCT GGGCGCTGGA AGCCTATGGT GCCGCCTACG TGCTGCAGGA AATGCTCACG
GTCAAGTCCG ATGACGTGGT CGGCCGTACC AAGGTGTACG AAAGCATCGT CAAGGGTGAG
CATGCGATCA CCGCCGGCAT GCCGGAGTCG TTCAACGTGC TGGTGAAGGA AATTCGCTCG
CTCGGTATCG ACATGGAACT CGAACGCAGC TGA
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| Protein sequence | MAYSFTERKR IRKSFGNRES VLTVPYLLQM QKDAYIAFLQ ADRAPQKRMV EGLQAAFQNA
FPIVSHNGFV EMKFIEYNLA KPAFDVRECQ TRGLTFASAV RAKVQLIIYD RESSTSQSKV
VKEVKEQEVY MGEVPLMTDK GSFVINGTER VIVSQLHRSP GVFFEHDKGK THSSGKLLFS
ARIIPYRGSW LDFEFDPKDI LYFRVDRRRK MPVTILLKAI GLNHESILAN FFVFDNFRLM
DSGAQMEFVA ERMRGEVARF DLTDKAGKVV VAKDKRITVR HTRELEQSGT TSISVPEDFL
IGRVVAKNII DTDTGEIIAK ANDELTELLL KKLRTAGIQN LQVLYTNELD QGAYISQTLR
ADETADEFAA RVAIYRMMRP GEPPTEDAVQ ALFQRLFYNP DTYDLSRVGR MKFNARVGRD
ESTGPMVMTN EDILAVVKIL VDLRNGNGEV DDIDHLGNRR VRCVGELAEN QYRTGLARIE
KAVKERLGQA EQEPLMPHDL INSKPISAAL KEFFGASQLS QFMDQTNPLA EITHKRRVSA
LGPGGLTRER AGFEVRDVHV THYGRVCPIE TPEGPNIGLI NSLALYARLN EYGFIETPYR
RVADSKVTME IDYLSAIEEG KYVIAQANAA LDNEGRLTGD LVSAREKGES ILVSAERVQY
MDVSPAQIVS VAASLVPFLE HDDANRALMG ANMSRQAVPV LRPEKPLVGT GIERVAAVDS
GTVVTATRGG VVDYVDATRI VVRVNDAEAL AGEIGVDIYN LIKYQRSNQN TNIHQRPIVK
MGDKLAKGDV VADGASTDLG EIAIGQNMLI GFMPWNGYNF EDSILISERV VAEDRYTSIH
IEELVVMARD TKLGSEEITR DIPNLSEQQL NRLDESGIIY VGAEVQPGDT LVGKVTPKGE
TTLTPEEKLL RAIFGEKASD VKDTSLRVSQ GSSGTVIDVQ VFTREGITRD KRAQQIIDDE
LKRYRLDLND QLRIVEADAF DRIEKLLIGK IANGGPKKLA KGTKLDKAYL TDVEKYHWFD
IRPADDEVAS QLESIKNSME QTRHSFDLSF EEKRKKLTQG DELPSGVLKM VKVYLAVKRR
LQPGDKMAGR HGNKGVVSKI VPVEDMPHMA DGTPCDIVLN PLGVPSRMNV GQVLEVHLGW
AAKGLGQRIG DMLQAESKVA ELRQFMDTLY NKSGRTEDLA SLSDEQVVEM AQNLTTGVPF
ATPVFDGASE ADIMTMLQLA YPDAVAKAKG LTPTRTQAQL YDGRTGDAFE RTTTVGYMHF
LKLHHLVDDK MHARSTGPYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG AAYVLQEMLT
VKSDDVVGRT KVYESIVKGE HAITAGMPES FNVLVKEIRS LGIDMELERS
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