| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3639 |
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| Symbol | |
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| ID | 4687837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3869514 |
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| End bp | 3873728 |
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| Gene Length | 4215 bp |
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| Protein Length | 1404 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639836653 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_983856 |
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| Protein GI | 121606527 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.487257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0782646 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAT TACTCGACCT GTTCAAGCAG TTCACGCCGG ATGAGCATTT CGATGCCATC
AAGATCGGCA TGGCCTCGCC TGAGAAAATT CGTTCGTGGT CTTTCGGCGA AGTCAAAAAG
CCCGAGACCA TCAACTACCG CACCTTCAAG CCAGAGCGCG ACGGTCTTTT TTGCGCCAAG
ATTTTTGGCC CCATCAAGGA CTACGAATGC CTGTGCGGCA AGTACAAGCG CCTCAAGCAC
CGCGGTGTCA TCTGCGAAAA GTGCGGCGTT GAAGTCACGC AGACCAAGGT TCGCCGCGAA
CGCATGGGTC ACATCGACCT GGCCGCTCCC TGCGCGCACA TCTGGTTTTT GAAGTCGTTG
CCGTCGCGTC TGGGCCTGGT GCTCGACATG ACGCTGCGCG ACATCGAACG CGTGCTGTAC
TTCGAAGCCT ACGTCGTGAC CGACCCCGGC ATGACCCCGC TGAAGAAATT CAGCATCATG
TCGGAAGACG ATTTCGACGC CAAGCGCAAG GAATACGGCG ACGAGTACAC CGCCAAGATG
GGCGCCGAAG GCATCAAGGA TCTGCTCGAA GGCCTGGACC TTGACATTGA AATCGACAAG
CTGCGCAACG ACCTGACCGG CTCCGAGATC AAGATCAAGA AGAACGCCAA GCGCCTGAAG
CTGATGGAAG GATTCAAGAA ATCCGGCATC AAGCCCGAGT GGATGGTTCT GGACGTGCTG
CCGGTGCTGC CGCCTGACCT GCGTCCCCTG GTTCCGCTGG ACGGCGGCCG CTTTGCGACC
TCCGACCTGA ACGATTTGTA CCGCCGCGTC ATCAACCGCA ACAGCCGCCT GCGCCGTTTG
CTGGAATTGA AAGCGCCGGA AATCATTGCC CGCAACGAAA AGCGCATGCT CCAGGAAGCC
GTGGACAGCT TGCTGGACAA CGGCCGCCGT GGCAAGGCCA TGACGGGCGC GAACAAGCGC
GCGCTCAAGT CGCTGGCCGA CATGATCAAG GGCAAGTCGG GCCGTTTCCG CCAGAATTTG
CTGGGCAAGC GCGTCGATTA CTCGGGTCGT TCGGTGATTA CCGTGGGCCC GACGCTCAAG
CTGCACCAGT GCGGCCTGCC CAAGCTGATG GCGCTGGAAC TGTTCAAGCC CTTCATCTTC
GCGCAGCTCG AAGTGCGTGG CATCGCCACC ACCATCAAGG CGGCCAAGAA GGAAGTCGAA
ACCGGCACGC CGGTGGTCTG GGACATTCTG GAAGAGGTCA TCAAGGAGCA TCCGGTGATG
CTCAACCGTG CGCCTACGCT GCACCGCTTG GGTATCCAGG CGTTCGAGCC GATCCTGATC
GAAGGCAAGG CGATCCAGCT GCACCCACTG GTCTGCTCGG CGTTCAATGC CGACTTTGAC
GGTGACCAGA TGGCCGTTCA CGTCCCGCTG TCGGTTGAAG CGCAGATGGA AGCGCGCACG
CTGATGCTGG CTTCGAACAA CATTTTGTTC CCGGCCAACG GCGAGCCTTC CATCGTTCCT
TCCCAGGACG TGGTGCTGGG TCTGTACTAC ACGACCCGCG ACCGCACCAA CGGCAAGGGC
GAAGGCCTGG TGTTCTCCGA CACCGGCGAA GTCCGCCGCG CCTTTGACGC GGGTGAACTC
GACCTGAACG CCCGCATCAG CGTGCGCCTG ACCGAGTGGA GCAAGGACAA GGAAACGAAC
GAGTTCGTGC CATCGACCAA GCTGTGGGAA ACCACCGGCG GGCGCGCACT GCTGTCCGAA
ATCCTGCCCA AGGGCCTGCC TTTTTCCAAC ATCAACAAGG CGTTGAAGAA AAAGGAAATC
TCCAAGCTCA TCAACGTGTC TTTCCGCAAA TGCGGACTCA AAGAGACCGT GGTGTTTGCC
GACAAGCTGC TGCAGTCGGG TTTCCGCCTG GCGACCAAGG CCGGCATCTC GATCTGCATC
GAAGACATGC TGGTGCCCAA GGAAAAGACC AGCATCATTG CGCACGCCCA GAAGGAAGTC
AAAGAGATCG AGCAGCAGTA CACCTCGGGT CTGGTGACGG CCGGCGAGCG CTACAACAAG
GTGGTCGATA TCTGGGGCAA GTCGGGCGAT GAGGTCTCCA AGGCCATGAT GGCCCAGCTG
TCGAAGGAAA AAGTCATTGA CCGCCACGGC AATCTGGTCG AGCAGGATTC GTTCAACTCA
ATCTACATGA TGGCCGACTC GGGCGCACGC GGTTCCGCAG CGCAGATTCG CCAGGTCGCC
GGTATGCGCG GCTTGATGGC CAAGCCCGAC GGCTCGATCA TCGAAACGCC GATTACCGCG
AACTTCCGCG AAGGCCTGAA CGTTCTGGAG TACTTCATCT CCACCCACGG TGCCCGTAAG
GGTCTGGCCG ATACGGCGCT GAAAACCGCC AACTCCGGCT ACCTGACGCG CCGCCTGTGC
GACGTGGTGC AGGATCTGGT CGTGACCGAA GACGACTGCG GTACGCTCGA CGGCTCCGTC
ATGCGCGCGA TCGTCGAGGG TGGCGAGGTC ATCGAATCGC TGCGCGACCG GGTTCTCGGC
CGCACCATCG TCGAAGACGT GCTGCACCCC GAAAACCGCT CGGTGCTGAT CAAGGCCGGC
GTCATGCTGG ACGAAGACCT GATCGAGGAA CTCGAAGCCG CTGGCGTCGA TGAAGTCAAG
GTGCGGACCG CACTGACCTG CGAAACCCGC TTTGGCCTGT GCGCCAAGTG CTATGGCCGT
GACTTGGGTC GCGGCGGCCT GATCAACATC GGCGAAGCGG TCGGTATCAT CGCCGCCCAG
TCGATTGGCG AGCCCGGCAC GCAGCTGACG ATGCGGACCT TCCACATCGG TGGCGCGGCA
TCGCGGGCGG CAATTGCCTC CAGCGTCGAG GCCAAGTCCA ACGGCGTGAT CGGTTTCAAC
GCACCGATGC GCTATGTGAC CAACGGCAAA GGTGATCTGG TGGTGATTGC CCGCTCCGGC
GAAATCATCA TCCATGACGA GCATGGCCGC GAGCGCGAGC GCCACAAGGT GCCTTACGGC
GCCACGCTGA CGGTCAAGAT CGACCAGACC ATCAAGGCTG GCGCCATCTT GGCCAACTGG
GATCCGCTGA CCCGCCCCAT CATCACCGAA TTCGCCGGCA AGGTGCAGTT CGAGAATGTG
GAAGAAGGCG TGACGGTGGC CAAGCAGGTC GATGATGTGA CCGGCCTCTC GACCCTGGTG
GTGATCGATC CGAAGCGCCG CGGTGCGACC AAGGTGATCC GTCCCCAGGT CAAGCTGATC
GACGCCACCG GCAACGAAGT CAAGATTCCC GGCACCGATC ACTCGGTGAC GATTGGCTTC
CAGATCGGCG CGCTGGTCCA GGTGCGTGAC GGCCAGGACG TGGGCCCCGG CGAAGTGCTG
GCCCGCATTC CGATTGAAGG CCAGAAGACC CGCGACATTA CCGGCGGTCT GCCGCGCGTG
GCCGAGTTGT TCGAAGCCCG CACGCCGAAG GACAAGGGAA CGCTGGCCGA GATGACCGGC
ACCGTGTCGT TCGGCAAGGA GACCAAGGGC AAGGTTCGCC TGCAGATCAC CGATCCTGAA
GGCAAGGTCT GGGAAGACCT GGTTCCGAAG GAAAAGAACA TCCTGGTGCA TGAAGGCCAG
GTGGTGAACA AGGGTGAGTC GATTGTCGAT GGTCCGGCCG ATCCGCAGGA CATCCTGCGC
CTGCTGGGCG TGGCCGAACT GGCCCGCTAC ATCGTCGATG AAGTGCAGGA CGTGTACCGT
CTGCAGGGCG TGAAGATCAA CGACAAGCAC ATCGAAGTGA TTGTTCGCCA GATGCTGCGT
CGCGTGGTGG TCGAGAACGT CGGCGACACC AGCTACATCG CCGGTGAACA GGTCGAGCGT
TCGGCGCTGC TGGATGTCAA CGACGCGCTG CGCGCCGATG GCAAGATTCC GGCCACCTTC
AGCAACCTGC TGCTCGGTAT CACCAAGGCG TCGCTCTCGA CCGATTCGTT CATCTCGGCG
GCTTCCTTCC AGGAAACCAC CCGCGTGCTC ACCGAGGCTG CCATCATGGG CAAGCGCGAC
GAGTTGCGCG GCCTGAAGGA AAACGTGATC GTCGGCCGCC TGATTCCTGC CGGCACCGGC
ATGGCCTACC ACGAAGCCCG CAAGGCCAAG GATCTGATGG ACGACTCCGA ACGCCGCGCC
ATCGCCGAGT CCGAAGCCGC CGAACTGGAA GCCTCGCAGG CTGAAACCAG CGATGAAAAC
GCCGCCGCCG AGTAA
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| Protein sequence | MKSLLDLFKQ FTPDEHFDAI KIGMASPEKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLAAP CAHIWFLKSL
PSRLGLVLDM TLRDIERVLY FEAYVVTDPG MTPLKKFSIM SEDDFDAKRK EYGDEYTAKM
GAEGIKDLLE GLDLDIEIDK LRNDLTGSEI KIKKNAKRLK LMEGFKKSGI KPEWMVLDVL
PVLPPDLRPL VPLDGGRFAT SDLNDLYRRV INRNSRLRRL LELKAPEIIA RNEKRMLQEA
VDSLLDNGRR GKAMTGANKR ALKSLADMIK GKSGRFRQNL LGKRVDYSGR SVITVGPTLK
LHQCGLPKLM ALELFKPFIF AQLEVRGIAT TIKAAKKEVE TGTPVVWDIL EEVIKEHPVM
LNRAPTLHRL GIQAFEPILI EGKAIQLHPL VCSAFNADFD GDQMAVHVPL SVEAQMEART
LMLASNNILF PANGEPSIVP SQDVVLGLYY TTRDRTNGKG EGLVFSDTGE VRRAFDAGEL
DLNARISVRL TEWSKDKETN EFVPSTKLWE TTGGRALLSE ILPKGLPFSN INKALKKKEI
SKLINVSFRK CGLKETVVFA DKLLQSGFRL ATKAGISICI EDMLVPKEKT SIIAHAQKEV
KEIEQQYTSG LVTAGERYNK VVDIWGKSGD EVSKAMMAQL SKEKVIDRHG NLVEQDSFNS
IYMMADSGAR GSAAQIRQVA GMRGLMAKPD GSIIETPITA NFREGLNVLE YFISTHGARK
GLADTALKTA NSGYLTRRLC DVVQDLVVTE DDCGTLDGSV MRAIVEGGEV IESLRDRVLG
RTIVEDVLHP ENRSVLIKAG VMLDEDLIEE LEAAGVDEVK VRTALTCETR FGLCAKCYGR
DLGRGGLINI GEAVGIIAAQ SIGEPGTQLT MRTFHIGGAA SRAAIASSVE AKSNGVIGFN
APMRYVTNGK GDLVVIARSG EIIIHDEHGR ERERHKVPYG ATLTVKIDQT IKAGAILANW
DPLTRPIITE FAGKVQFENV EEGVTVAKQV DDVTGLSTLV VIDPKRRGAT KVIRPQVKLI
DATGNEVKIP GTDHSVTIGF QIGALVQVRD GQDVGPGEVL ARIPIEGQKT RDITGGLPRV
AELFEARTPK DKGTLAEMTG TVSFGKETKG KVRLQITDPE GKVWEDLVPK EKNILVHEGQ
VVNKGESIVD GPADPQDILR LLGVAELARY IVDEVQDVYR LQGVKINDKH IEVIVRQMLR
RVVVENVGDT SYIAGEQVER SALLDVNDAL RADGKIPATF SNLLLGITKA SLSTDSFISA
ASFQETTRVL TEAAIMGKRD ELRGLKENVI VGRLIPAGTG MAYHEARKAK DLMDDSERRA
IAESEAAELE ASQAETSDEN AAAE
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