Gene Pnap_3611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3611 
Symbol 
ID4689735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3841496 
End bp3842824 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content66% 
IMG OID639836624 
Producthypothetical protein 
Protein accessionYP_983828 
Protein GI121606499 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.426846 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTTT CCAAACTCGT CGTTGCCGCA GCCGTGGTCG CCGCTGGCGC AGCGTCGCTG 
TCCACCAGCG CCTTCGCGCA GGCCAAGGAG CAGTTCTTCC CGCTGCTGTC CTACCGCACC
GGCCCCTACG CGCCCAACGG CACGCCCTGG GCCAACGGCA AGCAGGACTA CATCAAGATG
GTCAATGCGC GCGATGGCGG CGTCAACGGC GTCAAGCTGA CGTTTGAAGA ATGCGAAACC
GGCTACGCCA CCGACCGGGG CGTCGAATGC TACGAACGCC TGAAGAACAA GCCCGGCGTG
GCGCTGATTG ACCCGCAGGC GACCGGCATC ACCTTTGCGC TGACCGAAAA GGTGCCCGTG
GACAAGATCC CGCTGATCAC GCTGGGCTAC GGCCTGTCGG TGGCGCAGGA CGGCATGGCC
TTCAAGTGGA ACTTCCCGCT GATGGGCAGC TACTGGACCG GCGCCGATAT CCTGGTGCAG
CACATCGGCA AGAGCGCCGG CGGCCTGGAC AAGCTCAAGG GCAAGAAAAT CGCGCTGGTC
TATCACGACA GCCCGTTTGG CAAGGAGCCG ATTCCGCTGC TGCAGGAGCG CGCCCGCATG
CACGGCTTCG AGCTGCAGCT GCTGCCGGTC ACGGCGCCCG GCGTCGAGCA GAAAGCCACC
TGGCTGCAGG TGCGCCAGAG CCGGCCTGAC TACGTGATGC TGTGGGGCTG GGGCGTGATG
AACTCCACCG CCCTGAAGGA AGCGCAGGCC ACCGGCTTTC CGCGCGACAA GCTCTACGGC
GTGTGGTGGG CCGGCGCCGA GCCGGACGTG CGCGACGTCG GCGACGGCGC CAAGGGCTAC
CAGGCGCTGG CGCTCAACGG CTCGGGCACC GAGTCCAAGG TCATCCAGGA CATCCTCAAG
AACGTGCATG ACAAGGGCCA GGGCACGGGT GCCAAGGACG AAGTGGGCTC GGTGCTGTAC
ACGCGCGGCG TGATCATCCA GATGCTCAGC ATCGAGGCCG TGCGCCGCGC GCAGGAGCGC
TTTGGCAAGG GCAAGGTCAT GACCGGCGAG CAGGTGCGCT GGGGCATGGA AAACCTGTCG
CTCGACCAGA AAAAGCTCGA CGCGCTGGGC TTTGCCGGTG TGATGCGCCC GATCTCGACC
AGCTGCGCCG ACCACATGGG CTCGACCTGG GCGCGCGTGC AGACCTGGGA CGGCAAGAAG
TGGAAGATGA CCTCCGACTG GTACCAGTCG GATGACCAGA TCATCAAGCC GCTGGTGAAA
GCCGGCGCCG ACAAGTACCT GGCCGACAAG AAGCTGACGC GCCGCACGGC AGCCGACTGC
CAGTCCTGA
 
Protein sequence
MKLSKLVVAA AVVAAGAASL STSAFAQAKE QFFPLLSYRT GPYAPNGTPW ANGKQDYIKM 
VNARDGGVNG VKLTFEECET GYATDRGVEC YERLKNKPGV ALIDPQATGI TFALTEKVPV
DKIPLITLGY GLSVAQDGMA FKWNFPLMGS YWTGADILVQ HIGKSAGGLD KLKGKKIALV
YHDSPFGKEP IPLLQERARM HGFELQLLPV TAPGVEQKAT WLQVRQSRPD YVMLWGWGVM
NSTALKEAQA TGFPRDKLYG VWWAGAEPDV RDVGDGAKGY QALALNGSGT ESKVIQDILK
NVHDKGQGTG AKDEVGSVLY TRGVIIQMLS IEAVRRAQER FGKGKVMTGE QVRWGMENLS
LDQKKLDALG FAGVMRPIST SCADHMGSTW ARVQTWDGKK WKMTSDWYQS DDQIIKPLVK
AGADKYLADK KLTRRTAADC QS