| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3528 |
|---|
| Symbol | |
|---|
| ID | 4688100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3746804 |
|---|
| End bp | 3747508 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639836542 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_983746 |
|---|
| Protein GI | 121606417 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.140844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAG AACTGCTGCG CATTGAAGAC CTGCACGCCT GGTATGGCGA GTCGCACATC
CTGCACGGCG TGAACATGAC CGTCAACGAA GGCGAAGTCG TGACCCTGCT GGGCCGCAAC
GGCGCCGGCC GCACCACCAC GCTGCGCGCC ATCGTCGGCA TGACCGGCGC GCGCAAGGGC
TCGATCAGGA TCAACGGCGA GGAAGCGCTC AAGCTGGCGC CGCACAAGGT GGCCCGGCTG
GGCGTGGGCT ACTGCCCCGA GGAGCGCGGC ATCTTCGCCA GCCTCTCGAC CGAGGAAAAC
CTGATGCTGC CGCCGACGAT TGCGCCGGGC GGCATGAGCG TGGCCGAGAT CTACACCATG
TTTCCGAACC TGAAGGAGCG CGCCCACAGC CCCGGCACGC GCCTGTCGGG CGGCGAACAG
CAGATGCTGG CCGTGGCGCG GATTCTGCGC ACCGGCGCGC GGCTGCTGCT GCTCGATGAA
ATCTCCGAAG GGCTGGCGCC GGTGATCGTG CAAAAGCTGG CCGAGATGAT CCTGGCGCTC
AAGGCCAAGG GCTACACCAT CGTGCTGGTC GAGCAGAACT TTCGCTTTGC CGCGCCGCTG
GCCGACCGCT TCTACGTCAT GGAACACGGA CAGATCGTCA AGCAGTTCGC GCAGGCTGAG
CTGTCACAGA ACATGGCCAT GCTGCAGGAA TTCCTGGGCG TTTGA
|
|---|
| Protein sequence | MTKELLRIED LHAWYGESHI LHGVNMTVNE GEVVTLLGRN GAGRTTTLRA IVGMTGARKG
SIRINGEEAL KLAPHKVARL GVGYCPEERG IFASLSTEEN LMLPPTIAPG GMSVAEIYTM
FPNLKERAHS PGTRLSGGEQ QMLAVARILR TGARLLLLDE ISEGLAPVIV QKLAEMILAL
KAKGYTIVLV EQNFRFAAPL ADRFYVMEHG QIVKQFAQAE LSQNMAMLQE FLGV
|
|---|
| |