Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3521 |
Symbol | |
ID | 4686210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 3737294 |
End bp | 3738496 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639836535 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_983739 |
Protein GI | 121606410 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTTTC GTTTTGCCAA AATGGCGGTT GCGTCAGCAG TTTTGAGCGT TGCCGGCCTG GCCGTTGCCG CCGACCCGAT CAAGATCGGG GTGTCCGGCC CCTTCACCGG CGGCTCGTCG TCGATGGGCG TGAGCATGCG TGACGGCGTC AGGCTGGCGG TCGAGGAAAT CAACAAGTCC GGCGGCGTGC TGGGCCGCAA GCTGCAGGTC GTCGAGCGCG ATGACGAAGC CAAGAACGAG CGCGGCGTGC AGATTGCCCA GGAGCTGATC AACAAGGAAA AAGTCACCGC CACCGTCGGC TACATCAATA CCGGCGTGGC GCTGGCGTCG CAGCGCTTCT TCCAGGAAGC CAAGATTCCG GTGATGAACA ACGTCGCCAC CGGCAGCGCG ATCACCGCCC AGTTCAAGGA CCAGCCTGAA AACTACATCT TCCGCAATGC CGCGCACGAC AGCATCCAGG CGCCGATGAT CGTCGAGGAA GCCGTGACCC GGCGCGGCTT CAAGAAGGTC GCCATCCTGG CCGACTCGAC CAACTACGGC CAGCTCGGCC GGGCCGACCT GGAAACCGCG CTGAAAGCCA AGGGCATCAC GGCGGTGGCC ACCGAGAAGT TCAACATCAA GGATGTGGAC ATGACCGCCC AGCTGCTCAA GGCCAAGGCC GCAGGCGCTG AAGCCATCCT GACCTACGGC ATCGGCCCCG AACTGGCGCA GATCGCCAAC GGCATGACCA AGCTGGGCTG GAAAGTGCCG ATGGTCGGCA GCTGGACCTT GTCCATGGCC AACTACATCG ACAACGCCGG GCCGGGCGGC GAGGGCGCGC GCATGCCGCA AACCTTCATC CAGGAGCCGA CGACGCCCAA GCGCCAGTCC TTCATCATCA ACTATCTGAA AACCTTCAAC CCGAAGAACC AGCGCATCGA CTCGCCGGTG TCGGCGGCCC AGGGCTATGA CTCCATCTAC CTGCTGGCCG CCGCCATCAA GCAGGCCAAC TCGACCGAAG GCCCCAAGAT CAAGGCGGCG CTGGAAGACC TGAAGACGCC GGTCGAAGGC GTGATCACGA CCTACAACAA GCCGTTCACC GCCAAGGACC ACGAGGCCAT CACCGCCAAC ATTCCGGTGT TCGGCGAGGT CAAGGGCCAG CGCGTGGTGT ACGCCTACGC GGACGACCAG AAGAAAGCCT CTGAAATCCG CGTCAAGAAG TAA
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Protein sequence | MTFRFAKMAV ASAVLSVAGL AVAADPIKIG VSGPFTGGSS SMGVSMRDGV RLAVEEINKS GGVLGRKLQV VERDDEAKNE RGVQIAQELI NKEKVTATVG YINTGVALAS QRFFQEAKIP VMNNVATGSA ITAQFKDQPE NYIFRNAAHD SIQAPMIVEE AVTRRGFKKV AILADSTNYG QLGRADLETA LKAKGITAVA TEKFNIKDVD MTAQLLKAKA AGAEAILTYG IGPELAQIAN GMTKLGWKVP MVGSWTLSMA NYIDNAGPGG EGARMPQTFI QEPTTPKRQS FIINYLKTFN PKNQRIDSPV SAAQGYDSIY LLAAAIKQAN STEGPKIKAA LEDLKTPVEG VITTYNKPFT AKDHEAITAN IPVFGEVKGQ RVVYAYADDQ KKASEIRVKK
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