Gene Pnap_3521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3521 
Symbol 
ID4686210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3737294 
End bp3738496 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content63% 
IMG OID639836535 
Productextracellular ligand-binding receptor 
Protein accessionYP_983739 
Protein GI121606410 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTTTC GTTTTGCCAA AATGGCGGTT GCGTCAGCAG TTTTGAGCGT TGCCGGCCTG 
GCCGTTGCCG CCGACCCGAT CAAGATCGGG GTGTCCGGCC CCTTCACCGG CGGCTCGTCG
TCGATGGGCG TGAGCATGCG TGACGGCGTC AGGCTGGCGG TCGAGGAAAT CAACAAGTCC
GGCGGCGTGC TGGGCCGCAA GCTGCAGGTC GTCGAGCGCG ATGACGAAGC CAAGAACGAG
CGCGGCGTGC AGATTGCCCA GGAGCTGATC AACAAGGAAA AAGTCACCGC CACCGTCGGC
TACATCAATA CCGGCGTGGC GCTGGCGTCG CAGCGCTTCT TCCAGGAAGC CAAGATTCCG
GTGATGAACA ACGTCGCCAC CGGCAGCGCG ATCACCGCCC AGTTCAAGGA CCAGCCTGAA
AACTACATCT TCCGCAATGC CGCGCACGAC AGCATCCAGG CGCCGATGAT CGTCGAGGAA
GCCGTGACCC GGCGCGGCTT CAAGAAGGTC GCCATCCTGG CCGACTCGAC CAACTACGGC
CAGCTCGGCC GGGCCGACCT GGAAACCGCG CTGAAAGCCA AGGGCATCAC GGCGGTGGCC
ACCGAGAAGT TCAACATCAA GGATGTGGAC ATGACCGCCC AGCTGCTCAA GGCCAAGGCC
GCAGGCGCTG AAGCCATCCT GACCTACGGC ATCGGCCCCG AACTGGCGCA GATCGCCAAC
GGCATGACCA AGCTGGGCTG GAAAGTGCCG ATGGTCGGCA GCTGGACCTT GTCCATGGCC
AACTACATCG ACAACGCCGG GCCGGGCGGC GAGGGCGCGC GCATGCCGCA AACCTTCATC
CAGGAGCCGA CGACGCCCAA GCGCCAGTCC TTCATCATCA ACTATCTGAA AACCTTCAAC
CCGAAGAACC AGCGCATCGA CTCGCCGGTG TCGGCGGCCC AGGGCTATGA CTCCATCTAC
CTGCTGGCCG CCGCCATCAA GCAGGCCAAC TCGACCGAAG GCCCCAAGAT CAAGGCGGCG
CTGGAAGACC TGAAGACGCC GGTCGAAGGC GTGATCACGA CCTACAACAA GCCGTTCACC
GCCAAGGACC ACGAGGCCAT CACCGCCAAC ATTCCGGTGT TCGGCGAGGT CAAGGGCCAG
CGCGTGGTGT ACGCCTACGC GGACGACCAG AAGAAAGCCT CTGAAATCCG CGTCAAGAAG
TAA
 
Protein sequence
MTFRFAKMAV ASAVLSVAGL AVAADPIKIG VSGPFTGGSS SMGVSMRDGV RLAVEEINKS 
GGVLGRKLQV VERDDEAKNE RGVQIAQELI NKEKVTATVG YINTGVALAS QRFFQEAKIP
VMNNVATGSA ITAQFKDQPE NYIFRNAAHD SIQAPMIVEE AVTRRGFKKV AILADSTNYG
QLGRADLETA LKAKGITAVA TEKFNIKDVD MTAQLLKAKA AGAEAILTYG IGPELAQIAN
GMTKLGWKVP MVGSWTLSMA NYIDNAGPGG EGARMPQTFI QEPTTPKRQS FIINYLKTFN
PKNQRIDSPV SAAQGYDSIY LLAAAIKQAN STEGPKIKAA LEDLKTPVEG VITTYNKPFT
AKDHEAITAN IPVFGEVKGQ RVVYAYADDQ KKASEIRVKK