| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3519 |
|---|
| Symbol | |
|---|
| ID | 4689478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3734397 |
|---|
| End bp | 3736328 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 643 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639836533 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_983737 |
|---|
| Protein GI | 121606408 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.971696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA AGACCCTTGT CGCCGCCATC ATCGGGCTGG CCCTGCTGGC GGCCGTGCCG
CTGATGACCA GCAACTCGTA TTACATCCAC ATGGTCGGCA CGATCATGAT CTACGCCATC
TTGCTCTACG GACTGGATAT CGTGGTCGGC TACACCGGCC AGGTGTCGCT GGGCCATGCC
GGGCTGTTCG GTGTCGGCTC CTACACCGCC GGCGTGCTGT TCCTCAAGCT GGGCGCGCCG
CTGTGGCTGA TTATTCCGGC CAGCATTGCG GTGACGGCCG GTTTTGGCGC CTTGCTGGCC
TTGCCGGCGC TGCGCGTGAC CGGCCCTTAC CTGGCGATGG TGACGCTGGC TTTCGGCACC
ATCATCCAGA TCCTGATCAA CGAGATGAAC TTCCTGACCG AAGGCCCGCT CGGCATCACG
ATCCCCAAGC CATCGATTGC CGGCTACAAG CTCGATGAAC ACGGCTTTTA CTGGCTGGTG
TTCGCGCTCA TGGTGGTGTC GCTGGTGGTG GTGGACCGCA TCCTGAAGTC GCAACTGGGC
CGCGCGTTCG AGGCGCTGCG CGGCAGCCCA GTGGCGTCCG ACTGCATGGG CGTGTCGGTG
TACCGCTACA AGGTCTATGC CTTCGTCATC AGCGCCGGTT TTGCCGGGCT GGCCGGCTGC
CTGTATGCGT ATTCGGAGCA GTACATCTCG CCCAATACCT ACAACTTCGA GCTGACGGTG
CTGTTTTTGC TGGCCGTCAT CATGGGCGGG CGCAAGACCC GCTCGGGCGC CTTGCTGGGC
GCGGCCATCA TCGTGATCCT GCCCAAGCTG CTCGACGACC TGGAGCTGTT TCGGATCGTC
GCCTCGGGGC TGGCGGTCTT GATGCTGGTG GGCGCCATCG TCGGCGTGGC GCGCAAGATC
ACCACGCCCA GGGCGATGGC GATTCCGGTG GTTGGCACGA TGGCGCTGGC CGGCTTTGCG
TTCTGGCTGG AGTCGATCAC CGACTGGCGG CTGAGCATCT TTGGCCTGAT GATTTTGTTT
GTCGTGTATT ACCTGCAGGA CGGCATCGTG GGCTTTGTGC GCGCGCTGTT CCATGTCCGC
AAGCCTGCGC CTGAAGGCCT GAGCCGGGCC GGCGCTGACA CGGGCAAGGA CGCCATTTCG
GTGGCCGCCG GTGCTGGCGA GAAGGGCAGC GACCTCTTGA CGGCCAAGGG CATACTGATG
CAGTTCGGCG GCCTCAAGGC CATCAACCAG GTCGATCTGC GCATCCAGCG CGGCACCATC
CACGGCCTGA TCGGCCCGAA CGGCTCGGGC AAGAGCACCA TGATGAATGT GCTGACCGGC
ATCTACGTGC CGACCGCCGG CAGCATCGAC TTTGCCGGCC GCTCGGTGGT CGGGCGCACG
TCGTCGGACA TCGCGCTGTC GGGCATTGCG CGCACCTTCC AGAACGTGCA GCTGTTCGGC
GAGATGACGG CGCTGCAAAA CGTCCAGGTC GGCCTGCACC ACACGTTTGA CAGCAACATC
GTTGATGTGG CGCTGCACAC GCCGCGCTAC AAGCGCGAGG AAAGCTCGGC CATTCAGCGC
GGCATGGGCC TGCTGCAGTT TGTCGGCCTG GCCGATCTGG CCGCCGAGGA AGCGCGCAAC
CTGCCTTACG GCAAGCAGCG CCTGCTGGAA ATCGCCCGCG CCCTGGCGCT GGACCCGCAA
CTGCTGCTGC TCGACGAGCC GGCGGCCGGC CTGACCGCGC CCGACATCAA GGAGCTGGTC
ACCATCATCC GCAAGATCCG CGACCACGGC ATCACCGTGA TCCTGATCGA GCACCACATG
GACGTGGTGA TGAGCATGTG CGACACGGTG TCGGTGCTCG ACTTCGGCCA GAAAATCGCC
GAGGGCAAGC CGGCCGACGT GCAGGCGGAT GAAAAGGTCA TCGAGGCCTA CCTCGGCGGC
ACGGCGGCAT AA
|
|---|
| Protein sequence | MNRKTLVAAI IGLALLAAVP LMTSNSYYIH MVGTIMIYAI LLYGLDIVVG YTGQVSLGHA
GLFGVGSYTA GVLFLKLGAP LWLIIPASIA VTAGFGALLA LPALRVTGPY LAMVTLAFGT
IIQILINEMN FLTEGPLGIT IPKPSIAGYK LDEHGFYWLV FALMVVSLVV VDRILKSQLG
RAFEALRGSP VASDCMGVSV YRYKVYAFVI SAGFAGLAGC LYAYSEQYIS PNTYNFELTV
LFLLAVIMGG RKTRSGALLG AAIIVILPKL LDDLELFRIV ASGLAVLMLV GAIVGVARKI
TTPRAMAIPV VGTMALAGFA FWLESITDWR LSIFGLMILF VVYYLQDGIV GFVRALFHVR
KPAPEGLSRA GADTGKDAIS VAAGAGEKGS DLLTAKGILM QFGGLKAINQ VDLRIQRGTI
HGLIGPNGSG KSTMMNVLTG IYVPTAGSID FAGRSVVGRT SSDIALSGIA RTFQNVQLFG
EMTALQNVQV GLHHTFDSNI VDVALHTPRY KREESSAIQR GMGLLQFVGL ADLAAEEARN
LPYGKQRLLE IARALALDPQ LLLLDEPAAG LTAPDIKELV TIIRKIRDHG ITVILIEHHM
DVVMSMCDTV SVLDFGQKIA EGKPADVQAD EKVIEAYLGG TAA
|
|---|
| |