| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3480 |
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| Symbol | |
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| ID | 4688555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3692830 |
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| End bp | 3694797 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639836494 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_983698 |
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| Protein GI | 121606369 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.179961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.331186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTTTA CCAGAGTAGT AGCAACGCCT TTGCTGGGCC TGCCTCGTCC CGCCAAGCGA
GTGGTGGTCA TCGCGCTGGA TCTGCTCCTG ACGCTGGTTT CAGTGTGGGC CGCTTTTTAC
CTGCGCATCG ACCAGACAGG CCTGCCGCAT GCGCAGCAGC CCTATGTTTA CCTGCTCGCG
CCCTTGCTGG CGATTCCCGT GTTTGTGCGT TTTGGGCTGT ACCGCGCCAT TTTTCGCTAT
ACCGGCATGG CCGCCCTGGC CACCACGGCC AAGGCGGTCG CTGTGTATGC GCTGCTGTTC
TTTGTCGCGC TGCTGTATTT CAAGTGGGAC GGCGTGCCGC GCACCCTGGG CCTGATCCAG
CCCTTGCTGT TGCTGCTGCT GGTGGGCATC AGCCGATCCA TGGCCAGGTT CTGGCTGGCG
GGCTGGTCGA GCAAGGCGCA CCATGCGGCG GGCCGGCTCT TGATTTATGG CGCGGGCGAG
GCCGGCGTTG AAACCGCCGC CGCGCTGGCG GTGTCGCGCC AGTTCGTGCT GCTGGGCTTC
ATTGACGACG ACAAATCCAA GGCCGGAAGA AGCATCAACG ACGTTGACAT CATGGCGCCT
GACGAGGTCG CCGAGGCGGT GGAGAACATG GGCGTGACCG ACATCCTGCT GGCCATGCCG
GCGCTGGACC GTGCGCGCCG CAATGAAATC ATCGCCAGCC TGCGGGAGTT GCCGGTCCAC
GTCCGTACCT TGCCCGGCAT GGTGAACCTG GCGTCGGGGC GGGTCACGAT CCAGGATTTC
CAGGAACTCG ACGTTGAAGA CCTCTTGGGG CGCCCGCCGG TGCCGCCCGA CTCGACCTTG
CTGGCGCGCA ACCTGGCGGG CAAGGTGGTG CTGGTCACCG GGGCCGGCGG CAGTATCGGC
AGTGAACTGT GCCGCCAGAT CCTGCTGGAA AAGCCGCGCC AGCTGGTGCT GGTCGAACTC
AGCGAGTTTG CCCTGTACAC CATTCACCAC GAGCTGGAGG GCTTGTGCAG CGAACATAAC
TTGCCCATGG AAGTGATTCC CCTGCTGGGC AGCGTCGGAA ATTTTGGCCG CCTCAAAGAG
ATTTTCAATC TCTACCGGCC AGCCACGGTG TACCACGCAG CGGCTTACAA GCATGTGCCG
CTGGTCGAGA GCAACCCGTC CGAAGGCGTG TTCAACAACG TCTTCGGCAC CCTGAACACG
GCCCGGGCCG CCATGGAAAG CGGCACGTCG CATTTTGTGC TGGTGTCCAC CGACAAGGCG
GTTCGCCCCA CCAATGTCAT GGGCGCGACC AAGCGCATGG CCGAGCTGGT GCTGCAGGCA
CTGGCGGCCA GCCCGTCGCT GCGCTTCGTT TCCCCGGACG GCTCCTACAG CGCCGAAGTC
CAGAACCGCA CCGTGTTTGC CATGGTGCGC TTTGGCAACG TGCTGGGCAG CAGCGGCAGC
GTGGTGCCGC TGTTTCGCAA GCAGCTGCGC GACGGCGGCC CGCTGACGGT CACGCATCCG
GAAGTCACCC GCTATTTCAT GACGATTCCC GAGGCGGCCC AACTGGTGCT GCAAGCCGGC
GCCATGGCCC ATGGCGGCGA CGTCTTTGTG CTGGACATGG GCAGCCCGCT GAAGATCGTC
GATCTGGCCA GGCGCATGGC GCAACTGTCC GGCCTGAGCC TGCGCGATGA AAACAACCCC
GACGGCGATA TTGAAATCAG GATCACCGGC CTTCGCCCCG GCGAAAAGCT TTACGAGGAA
CTGCTGATTG GCGACAACCC CGAGCCGACT GCGCATCAGC GCATCATGAA GGCGCATGAG
GATTTCGTGG CCTGGCCCGA ACTGGCGCCG ATACTGGCGG AAATCCGCCA GGCCGCCACC
GTCAACAACG AGGCCGTCAT GAAATCCATC ATGAAGCGGC TGGTGCATGG CTACATTCCG
CATACCGCCT GCCCGGCAAA AATTCCCGCG CAGGCTCGCG CGGAGTAA
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| Protein sequence | MFFTRVVATP LLGLPRPAKR VVVIALDLLL TLVSVWAAFY LRIDQTGLPH AQQPYVYLLA
PLLAIPVFVR FGLYRAIFRY TGMAALATTA KAVAVYALLF FVALLYFKWD GVPRTLGLIQ
PLLLLLLVGI SRSMARFWLA GWSSKAHHAA GRLLIYGAGE AGVETAAALA VSRQFVLLGF
IDDDKSKAGR SINDVDIMAP DEVAEAVENM GVTDILLAMP ALDRARRNEI IASLRELPVH
VRTLPGMVNL ASGRVTIQDF QELDVEDLLG RPPVPPDSTL LARNLAGKVV LVTGAGGSIG
SELCRQILLE KPRQLVLVEL SEFALYTIHH ELEGLCSEHN LPMEVIPLLG SVGNFGRLKE
IFNLYRPATV YHAAAYKHVP LVESNPSEGV FNNVFGTLNT ARAAMESGTS HFVLVSTDKA
VRPTNVMGAT KRMAELVLQA LAASPSLRFV SPDGSYSAEV QNRTVFAMVR FGNVLGSSGS
VVPLFRKQLR DGGPLTVTHP EVTRYFMTIP EAAQLVLQAG AMAHGGDVFV LDMGSPLKIV
DLARRMAQLS GLSLRDENNP DGDIEIRITG LRPGEKLYEE LLIGDNPEPT AHQRIMKAHE
DFVAWPELAP ILAEIRQAAT VNNEAVMKSI MKRLVHGYIP HTACPAKIPA QARAE
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