Gene Pnap_3454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3454 
Symbol 
ID4687715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3664741 
End bp3665769 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content64% 
IMG OID639836468 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_983672 
Protein GI121606343 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCA AAACCTTTCT CGGCCTGGCC ATGGCTGCCG CCGCGCTGGC CGTCGCCAAT 
GCCGCGCCCG CGCAGACCTA CAAGTCCGAA TACAAGATGT CGCTGGTGCT CGGCCCCGCC
TACCCGTGGG GCAAGGGCGG CGAAATCTGG GCCAACCTGG TGCGCGAACG CACGCAGGGC
CGCATCAACA TCAAGCTCTA TCCCGGCGTC TCGCTGATCC AGGGCGACCA GACGCGCGAG
TTCAGCGCCA TCCGCCAGGG CGTGATCGAC CTGGCCGTGG GCTCGACCAT CAACTGGTCG
CCGCAGGTCA AGGAGCTGAA TCTGTTCTCG CTGCCCTTCC TGATGCCCGA CTACGCCGCG
ATGGACGCGC TGACCCAGGG CGACGTGGGC AATGAGATTT TCCAGATCAT CAACAAGGCC
GGCGTGATGC CGCTGGCCTG GGGCGAAAAC GGCTACCGCG AGATCAGCAA TTCCAAGCTG
GCCATCAGGA AGCCGCAAGA CCTAAAGGGC CTGAAAATCC GCGTCGTCGG CTCGCCGCTG
TTCCTCGACA CCTTCACGGC GCTCGGCGCG AACCCGACCC AGATGAGCTG GGCCGATGCC
CAGCCGGCAC TGGCCACCGG CGCGGTGGAC GGCCAGGAAA ATCCGATGGC GATCTACACC
GCCGCCAGGC TGCAGACCAT GGCGCAAAAG CATGTGACGA TGTGGGGCTA TGTGGCCGAC
CCGCTGATCT TCGTGGCCAA CAAGGACATC TGGGCTTCCT GGACGCCAGC GGACCAGGCC
ATCGTCAAAC AGGCCGCGCT GGACGCCGGC AAGCAGGAAA TCGCCATCGC GCGCAAGGGC
CTGGCCGAAG CCGACAAGCC GCTGCTCAAG GAAATCGCCA GCCATGGCGT GACCGTGACC
CAGCTGAGCC CGCAGGAGCG CGATGCCTTC GTGAAGGCCA CGCGCCCGGT GTATGACAAG
TGGAAGAACC AGATCGGCGC CAGCCTGGTC AATAGCGCTG AAAAGTCGAT TGCTGTGCGC
AAGCAATAA
 
Protein sequence
MKRKTFLGLA MAAAALAVAN AAPAQTYKSE YKMSLVLGPA YPWGKGGEIW ANLVRERTQG 
RINIKLYPGV SLIQGDQTRE FSAIRQGVID LAVGSTINWS PQVKELNLFS LPFLMPDYAA
MDALTQGDVG NEIFQIINKA GVMPLAWGEN GYREISNSKL AIRKPQDLKG LKIRVVGSPL
FLDTFTALGA NPTQMSWADA QPALATGAVD GQENPMAIYT AARLQTMAQK HVTMWGYVAD
PLIFVANKDI WASWTPADQA IVKQAALDAG KQEIAIARKG LAEADKPLLK EIASHGVTVT
QLSPQERDAF VKATRPVYDK WKNQIGASLV NSAEKSIAVR KQ