Gene Pnap_3452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3452 
Symbol 
ID4688020 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3662871 
End bp3663410 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content64% 
IMG OID639836466 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_983670 
Protein GI121606341 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.408316 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCCC CGCCCCACGC TGGCCATGCG CCAGAAGATC CGCCCGAAGC CTTGCCACCG 
CTTGATGACC TTGACGAGCC GGTCCGGGTG CCGCTCAAGA TCGAGGACGG GCTGACCGTC
CTGGTCATGG GTGCGCTGGC GCTGATCACC TTTGCCAATG TGATTGCGCG CTATTTCACC
AACCAGTCGT TTGCCTGGAC CGAAGAGTTC TCGGTGTTCC TGATGATCGT GCTGGCGCTG
GTCGGCAGTT CGGCCGCCGT CGCGCGGGAC CGGCATATCC GCATCGAATA CTTTTCCGAC
AGCGGCTCCA TGGCCCGGCG CAAGAACCTG TCGCGCCTGG GCGCGGTGCT GGTTGCACTG
CTGTTTGCGC TGATTGGCGT GCTGAGCATT CGGCTGGTGT GGGACGACTA CCGGTTCAAT
GAAACCTCGC CGGGCATCGG GATTCCGCAG TGGTGGTATT CGATCTGGCT GCCGATCCTG
TCCATCGGCA TCGCGCTGCG CGCCGTCGGC CTGTTCATCC GCCGCGGACG CTGGTCATGA
 
Protein sequence
MSSPPHAGHA PEDPPEALPP LDDLDEPVRV PLKIEDGLTV LVMGALALIT FANVIARYFT 
NQSFAWTEEF SVFLMIVLAL VGSSAAVARD RHIRIEYFSD SGSMARRKNL SRLGAVLVAL
LFALIGVLSI RLVWDDYRFN ETSPGIGIPQ WWYSIWLPIL SIGIALRAVG LFIRRGRWS