Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3452 |
Symbol | |
ID | 4688020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 3662871 |
End bp | 3663410 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639836466 |
Product | tripartite ATP-independent periplasmic transporter DctQ |
Protein accession | YP_983670 |
Protein GI | 121606341 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.408316 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTCCC CGCCCCACGC TGGCCATGCG CCAGAAGATC CGCCCGAAGC CTTGCCACCG CTTGATGACC TTGACGAGCC GGTCCGGGTG CCGCTCAAGA TCGAGGACGG GCTGACCGTC CTGGTCATGG GTGCGCTGGC GCTGATCACC TTTGCCAATG TGATTGCGCG CTATTTCACC AACCAGTCGT TTGCCTGGAC CGAAGAGTTC TCGGTGTTCC TGATGATCGT GCTGGCGCTG GTCGGCAGTT CGGCCGCCGT CGCGCGGGAC CGGCATATCC GCATCGAATA CTTTTCCGAC AGCGGCTCCA TGGCCCGGCG CAAGAACCTG TCGCGCCTGG GCGCGGTGCT GGTTGCACTG CTGTTTGCGC TGATTGGCGT GCTGAGCATT CGGCTGGTGT GGGACGACTA CCGGTTCAAT GAAACCTCGC CGGGCATCGG GATTCCGCAG TGGTGGTATT CGATCTGGCT GCCGATCCTG TCCATCGGCA TCGCGCTGCG CGCCGTCGGC CTGTTCATCC GCCGCGGACG CTGGTCATGA
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Protein sequence | MSSPPHAGHA PEDPPEALPP LDDLDEPVRV PLKIEDGLTV LVMGALALIT FANVIARYFT NQSFAWTEEF SVFLMIVLAL VGSSAAVARD RHIRIEYFSD SGSMARRKNL SRLGAVLVAL LFALIGVLSI RLVWDDYRFN ETSPGIGIPQ WWYSIWLPIL SIGIALRAVG LFIRRGRWS
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