| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3439 |
|---|
| Symbol | |
|---|
| ID | 4688642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3648278 |
|---|
| End bp | 3648985 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 639836453 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_983657 |
|---|
| Protein GI | 121606328 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.69832 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGAATG AAGCTGGCAG CGCGCGCCAT GCGGTCGTGA CCGGCAGCAG CTCGGGCATC
GGCAAGGCGA TTGCGCAGGC GCTGCTCAAT GCAGGCTGGG CCGTGACGGG CCTGGACCTG
TCGGCGCCGG CCATCGAAGA CCCGCGCTTT GAGCCCGTGC AGGTGGACCT GGCGGACGCC
GCCAGCCTGG ATGCCGCCGC AGCCCGCCTG CGCGGCGTCG ATGCGCTGGT GCATGCGGCC
GGCCTGCTGC GCCTGGGCGC GCTCGGCAGC CTGGACCCGG CAGCCGGTGA ACTGATGTGG
CGCCTGCATG TCGATGCGGC GTCGCGCCTG GCCAACGCGC TTGCGGATGC CATGGCGGCG
AAGGGCGATG GCCGCATCGT CTTCATCGGC AGCCGCGTGG CCCAAGGCAT GGCCGGGCGC
GGCCAGTATG CGGCCACCAA GGCCGCGCTG ATCGCCCTGG CGCGCAGCTG GGCGGCCGAA
CTCGCGCCGC GCGGCGTCAC GGTCAACGTG GTGTCGCCCG CCGCCACCCA GACCGCCATG
GCGCAAGACC CGGCGCGCGC CCTGACGGCA CCCAAGCTGC CGCCCATCGG GCGCCTGATC
CTGCCCGAGG AAGTCGCCGG GCTGGTGCTC TACCTGCTGT CTCCGCTGGC CGCCGCCATC
ACCGGCCAGG ACCTCCAGAT CTGCGGCGGC TCGTCGCTGG CCCGCTAA
|
|---|
| Protein sequence | MANEAGSARH AVVTGSSSGI GKAIAQALLN AGWAVTGLDL SAPAIEDPRF EPVQVDLADA
ASLDAAAARL RGVDALVHAA GLLRLGALGS LDPAAGELMW RLHVDAASRL ANALADAMAA
KGDGRIVFIG SRVAQGMAGR GQYAATKAAL IALARSWAAE LAPRGVTVNV VSPAATQTAM
AQDPARALTA PKLPPIGRLI LPEEVAGLVL YLLSPLAAAI TGQDLQICGG SSLAR
|
|---|
| |