| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3435 |
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| Symbol | dapF |
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| ID | 4689145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3644328 |
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| End bp | 3645215 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639836449 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_983653 |
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| Protein GI | 121606324 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTTTA TGCGAATCCG ATTTACCAAA ATGCAGGGCG CGGGCAACGA TTTCGTGATG
CTCGACGAGA CCCGTGGCCC GCTGGGCTTG AGCCCCGCCC ACTACCGTTT CCTGGCCGAC
CGCCACTTTG GCGTCGGCGC CGACCAGATC CTGACGGTGC GGCCTTCGCC GGGCGAAGGC
ATCGACTTCG AGTACGTGAT CCACAACGCC GACGGCGGCG AGGTCGAGCA GTGCGGCAAC
GGCGCGCGCT GCTTTGTGCG TTTCGTGCGC GAGCAGGGCC TGACCACCAA GGACGCGGTC
AAGGTCAAGA CCCTGGGCGG CATCATCGAG CCGTGCATGC AGCCCGACGG CCGCGTGACG
GTCAACATGG GCGCGCCGGT GTTTGAGCTG GAGCGCATCC CGTTCAACCC CGCCGGCTTG
ACGCCCCAAA CCGCCGGTTC ATGGCAAAAA TGGCCGCTTG CGCTGGATGG GCATGCGCAG
GCTGCTCCTG TTTTCGTAGC GGTCGTGTCA ATGGGAAATC CGCATGCGGT GCAACTGGTG
GACGATGTCG ATACTGCCCC GGTTCTTGAG GCCGGTCCGC TGATCGAGCA CCATCCGTCG
TTCCCCAGGC GCGTGAACGC CGGCTTCATG CAGGTCGTCT CGCGCAGCCA GATTCGCCTG
CGCGTCTATG AGCGCGGCGC CGGCGAGACG CTGGCCTGCG GCACCGGCGC CTGCGCGGCG
GTGGTGGCCG GCATCCGGCT GGGCCTGCTC GACAGCCGGG TCGATGTGCT GACGCGCGGC
GGCCAGCTCA CGATTGAATG GGCTGGCACG CTTGATGCTC CGGTGATGAT GACCGGACCG
GCAACGACCG TGTTCGAGTC AGAGATTGAA GTTCCCGACA CGCCGTAG
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| Protein sequence | MPFMRIRFTK MQGAGNDFVM LDETRGPLGL SPAHYRFLAD RHFGVGADQI LTVRPSPGEG
IDFEYVIHNA DGGEVEQCGN GARCFVRFVR EQGLTTKDAV KVKTLGGIIE PCMQPDGRVT
VNMGAPVFEL ERIPFNPAGL TPQTAGSWQK WPLALDGHAQ AAPVFVAVVS MGNPHAVQLV
DDVDTAPVLE AGPLIEHHPS FPRRVNAGFM QVVSRSQIRL RVYERGAGET LACGTGACAA
VVAGIRLGLL DSRVDVLTRG GQLTIEWAGT LDAPVMMTGP ATTVFESEIE VPDTP
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