| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3405 |
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| Symbol | |
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| ID | 4686809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3610727 |
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| End bp | 3612850 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639836419 |
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| Product | ribonuclease II |
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| Protein accession | YP_983623 |
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| Protein GI | 121606294 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.185041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGCG AGGGCTATTA CCGAGCATCA CCCAGGCTAA AGGATTCCGT TGTGTTTGTA
TTGTTTGAAG AAACTGGAAA ATTTCTGGCC GGCCGCATCC TGTCGGAAGC CGACAGCTCG
CTGCAGGTCG AACTCGACTC GGGCAAGCGC GTCAAGGTCA AGTCGGCCAA CGCGCTGCTG
AAGTTCGAGA AGCCCGCGCC TGCCGAGTTC ATCGCCGCCG GCCAGCGCCT GATTGAGGAA
ATCGACCTGG ACCTGGCCTG GGAATTCGCC AGCGACGAGG AATTCGGCTT TGCCGAACTG
GCGCGCGACT ACTTCAGCGC TGATGCGTCC AAACCGGCTT CAGCGGAGCA GCAGGCCGCC
GCCCTGTTCC GCCTGTACGA CGCGCCGCAT TATTTCCGCC GCGCCGGCAA GGGCCGCTTC
AAGAAAGCGC CGCCCGAAAT CCTGCAGCAG GCGCTGGCCG CCATCAAGAA GAAAAAGCAG
ATCACGGCGC AGATCGCCGC CTGGGCCGAG GAACTCGGAC AGGGCCAGTG CCCGGCGCCG
ATTCGCGACC AGCTCTACAA GATCCTTTTC AAGCCCGACA AGAACAGCGC CGAGTACAAG
GCCGTGGTCG ATGCCTCGCG CGCCACGCAC ACCGCGCCGC TCGATCTGCT GCAAAAAGCC
GGCGCCATTG CCTCGCCCTA CCAGTTCCAC TGGAAGCGCT TTTTGTTCGA GAACTTTCCC
AAGGGCACGC GCTTTCCGGA ATTGCAGGCG CCGCCCATCA AGGACGAGCT GCCGCTGGCC
GAAGTCCGCG CCTTCTCCAT CGACGACTCC AGCACCACCG AGATTGACGA TGCGCTGTCG
GTTCAAGGTC TGGGCAGCGG CGTCATCACG CTGGGCGTTC ACATCGCAGC GCCCGGCCTG
GCCGTGCTGC CGGGCAGCCC GATTGATGCG GTCGGCCGCG CGCGCATGTC CACCGTCTAT
ATGCCGGGCT ACAAGCTGAC CATGCTGCCC GACGACGTGG TGCAGGCCTA CACGCTGCAG
GAAGGCCGCA ACTGCCCTGC CCTGTCGCTT TACCTGACGA TGGACGAGGC CACGCTGGAG
GTCAAGCAGA CCGTCACCCG GCTCGAACAA GTGCCCATCG TCAGCAACCT GCGCCACGAC
CAGCTCGACA CCACCTTCAC GGAAGCGTTT TTTGAAGCCG CCCAAAGCGC GCCACGCGCC
GACGTTCAAT GGGGCGTGGA GCTGACCTTC ATGCACCGGC TGGCCCGGCA CCTGAAAGCC
CAGCGCGAAA TCGTTCGCGG CAAGCCCGAG AACTTCAACC GCCCCGACTA CAACTTCAAG
CTCGACAACC CCACCGGCGG CGAGCCGCAG GGCATTGAGA CGGTCAGCAT CAGCACGCGC
CAGCGCGGCT CGCCGCTCGA CCTGATCGTC GCCGAGGCCA TGATCCTGGC CAACAGCACC
TGGGGCCAGT GGCTGGCCGA GCATGGCGTT CCGGGCATTT ACCGCAGCCA GGCCAGCATG
GCGCCGGGCG TGAAGGTGCG CATGGGCACC AAGGCACTGC CGCACGCGGG CATGGGCGTC
AAAAGCTACG TCTGGGCCAC CTCGCCGCTG CGCCGCTACA CCGATCTGGT CAACCAGTGG
CAGATCATCG CCTGCGTCAA GCACGGCCGC AGCGCCGCGC TGGTGGCACC CTTCAAGCCC
AAGGACGCCG ACCTGTTCTC GGTGATTTCG TGCTTTGACG CCGCCTACAG CGCCTACAAC
GGCTTTCAGT CCGGCATCGA GCGCTACTGG ACGCTCAAAT ACCTGGAGCA AAACGGCATC
ACCGAACTGA CGGCGACCAG CTTCAAGGAC AACCTGGTGC GCGCCGACAC GCTGCCGCTG
GTGCTCGGCG CCATGGGCGC GCAGGGCCTG CCGCGCGGCG CCCATGTACG CGTCAAGCTC
GGCGAGATTG ACGAGATCAC GCTGGACGTG TTCGGCACCG TCATCGAGCG GCTGGACACC
GAGGCCGAAG CCGCCAGCAG CGCCGCCCAG GCCGACGACA GCGACGACGG CGAGGATGAC
CTGGCCGCCG GGCCGATTTC GATTGCGGTC GATATCAGCG AGCCGCAAGC CGATGCCGAA
GCCGCGCCTG CGGCCGCAGG CTGA
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| Protein sequence | MPREGYYRAS PRLKDSVVFV LFEETGKFLA GRILSEADSS LQVELDSGKR VKVKSANALL
KFEKPAPAEF IAAGQRLIEE IDLDLAWEFA SDEEFGFAEL ARDYFSADAS KPASAEQQAA
ALFRLYDAPH YFRRAGKGRF KKAPPEILQQ ALAAIKKKKQ ITAQIAAWAE ELGQGQCPAP
IRDQLYKILF KPDKNSAEYK AVVDASRATH TAPLDLLQKA GAIASPYQFH WKRFLFENFP
KGTRFPELQA PPIKDELPLA EVRAFSIDDS STTEIDDALS VQGLGSGVIT LGVHIAAPGL
AVLPGSPIDA VGRARMSTVY MPGYKLTMLP DDVVQAYTLQ EGRNCPALSL YLTMDEATLE
VKQTVTRLEQ VPIVSNLRHD QLDTTFTEAF FEAAQSAPRA DVQWGVELTF MHRLARHLKA
QREIVRGKPE NFNRPDYNFK LDNPTGGEPQ GIETVSISTR QRGSPLDLIV AEAMILANST
WGQWLAEHGV PGIYRSQASM APGVKVRMGT KALPHAGMGV KSYVWATSPL RRYTDLVNQW
QIIACVKHGR SAALVAPFKP KDADLFSVIS CFDAAYSAYN GFQSGIERYW TLKYLEQNGI
TELTATSFKD NLVRADTLPL VLGAMGAQGL PRGAHVRVKL GEIDEITLDV FGTVIERLDT
EAEAASSAAQ ADDSDDGEDD LAAGPISIAV DISEPQADAE AAPAAAG
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