Gene Pnap_3399 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3399 
Symbol 
ID4689577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3604781 
End bp3606307 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content66% 
IMG OID639836413 
Productpeptidase U62, modulator of DNA gyrase 
Protein accessionYP_983617 
Protein GI121606288 
COG category[R] General function prediction only 
COG ID[COG0312] Predicted Zn-dependent proteases and their inactivated homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.11018 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.700717 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCAC TCAATTCCGC CGCCGCCTCC GTTCGCCAAA CCAATGTCTC CGGGCGTCCG 
CCGGCCCGGC CCACCAAGGA TTCCACCGCC GGGCGGCTGG CGATTGCGCA AAAGCTGCTG
CTGGCGCCCT TCGGCCTGGA CGAAGCCGCC TTGAGCCGGG CGCTGGGCGA GATCACTTCC
TATGGCGTGG ACGATGCCGA CCTGTATTTC CAGTACACCC GCAGCGAAGG CTGGAGCCTG
GAAGAAGGCA TCGTCAAGAC CGGCTCCTTC AGCATCGACC AGGGCGTCGG CGTTCGCGCC
GTGAGCGGCG AGAAAACCGC CTTTGCCTAT TCCGACGATA TTTCCGAAGC CTCGCTGCTC
GATGCGGCGC GCACCGTGCG CAGCATCTCG GCCGCCGCCA AGTCCGGGCG CGTCAAGACG
CCGGCCCGCA AGGTGGCCAG CAGCCGCTCG CTCTACCGCG ACCTGGACCC GATTGCCACG
CTGGACAGCA CCGCCAAGGT CGAGCTGCTA GGCAAGGTTG AAAAGCTCGC CAAGGCCAAA
GACCCGCGCA TCGTGCAGGT CATGGCCGGA CTGGCCAGCG AATACGACGT GGTGATGGTG
GCGCGCGCCG ACGGCACGCT GGCCGCCGAT GTGCGCCCGC TGGTGCGCCT GAGCGTGACC
GTGATCGCCG AGCAAAAAGG CCGGCGCGAA GTGGGCTCCA GCGGCGGTGG CGGCCGTTTT
GGCCTGGCCT ATTTTGACGA CACGCAAATT GCCCAGTACG TCGATGCGGC CGTGAATGCC
GCGCTGACCA ACCTGGACGC GCGCCCCGCG CCGGCCGGCC AGATGACCGT GGTGCTGGGC
TCCGGCTGGC CCGGCATCCT GCTGCACGAG GCCATTGGCC ACGGGCTGGA AGGCGACTTC
AACCGCAAGG GCTCCAGTGC GTTTTCGGGT CGCATCGGCG AGCGCGTGGC CGCCAAGGGC
GTGACGGTGC TCGACGACGG CACGATTGCC GACCGCCGGG GCTCGCTCAA CATCGACGAC
GAGGGCAATG TCAGCCAGCG CAATGTGCTG ATCGAAGACG GCATCCTGAA GGGCTACATC
CAGGATTCGA TGAATGCGCG CCTGATGAAT GTCAAGCCCA CCGGCAACGG CCGGCGCGAA
AGCTATGCCC ATGTGCCGAT GCCGCGCATG ACCAACACCT ACATGCTGGG CGGCGACAAG
GCGCCCGAGG AAATCATCGC CAGCATCAAG AAAGGCCTGT ACGCCAGCAA CTTTGCCGGC
GGCCAGGTGG ACATCACCTC GGGCAAGTTC GTGTTCTCGG CCAGCGAAGC GTTCTGGGTT
GAAAACGGCA AGATTCTTTA TCCGGTCAAG GGCGCGACGA TTGTCGGCAA CGGCCCCGAT
GCGCTGACCC GCGTCACCAT GATCGGCAAC GACATGAAGC TCGACAGCGG CGTCGGCACC
TGCGGCAAGG AAGGCCAGAG CGTGCCGGTC GGCGTCGGCC AGCCGACGCT GCGCATTGAC
GGGCTGACCG TGGGCGGCAC CGCCTGA
 
Protein sequence
MTSLNSAAAS VRQTNVSGRP PARPTKDSTA GRLAIAQKLL LAPFGLDEAA LSRALGEITS 
YGVDDADLYF QYTRSEGWSL EEGIVKTGSF SIDQGVGVRA VSGEKTAFAY SDDISEASLL
DAARTVRSIS AAAKSGRVKT PARKVASSRS LYRDLDPIAT LDSTAKVELL GKVEKLAKAK
DPRIVQVMAG LASEYDVVMV ARADGTLAAD VRPLVRLSVT VIAEQKGRRE VGSSGGGGRF
GLAYFDDTQI AQYVDAAVNA ALTNLDARPA PAGQMTVVLG SGWPGILLHE AIGHGLEGDF
NRKGSSAFSG RIGERVAAKG VTVLDDGTIA DRRGSLNIDD EGNVSQRNVL IEDGILKGYI
QDSMNARLMN VKPTGNGRRE SYAHVPMPRM TNTYMLGGDK APEEIIASIK KGLYASNFAG
GQVDITSGKF VFSASEAFWV ENGKILYPVK GATIVGNGPD ALTRVTMIGN DMKLDSGVGT
CGKEGQSVPV GVGQPTLRID GLTVGGTA