Gene Pnap_3360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3360 
Symbol 
ID4690133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3559405 
End bp3560475 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content64% 
IMG OID639836373 
ProductnifR3 family TIM-barrel protein 
Protein accessionYP_983578 
Protein GI121606249 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00737] putative TIM-barrel protein, nifR3 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0316669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCG GTCCTTATGC TTTGGCAAAC AATGTGTTTG TCGCGCCCAT GGCCGGCGTC 
ACGGACCGGC CGTTTCGCCA GCTGTGCAAA AAGCTGGGGG CGGGCTATGC GGTCAGCGAG
ATGGTGACTT CGCGCCGCGA CCTGTGGGAC ACGCTCAAAA CATCGCGCCG CGCCAACCAT
GAAGGCGAAG CCGCGCCGAT TGCCGTGCAG ATTGCCGGCA CCGACGCGCG GATGATGGCC
GATGCCGCCG CCTACAACCT GGACCGCGGC GCCCAGATCA TCGACATCAA CATGGGCTGC
CCGGCCAAGA AGGTCTGCAA CAAATGGGCC GGCTCGGCGC TGATGCAGGA CGAAACCCTG
GCGCTGCAGA TCATCGAGGC CGTGGTCGCT GCCTGCCTGC CGCACGGCGT TCCGGTGACG
CTCAAGATGC GCACCGGCTG GGCGCAAAGC CACAAGAATG CCTTGAGCAT TGCGCGTGCC
GCCGAAAGCG CCGGCATTCA GATGCTGGCC GTGCATGGCC GCACCCGCGA GCAGGGCTAC
AAGGGCCTGG CCGAATACGA CACGATTGCC GAGGTCAAGG CCGCGCTGCG GATTCCGGTG
GTGGCCAATG GCGACATCGA CAGCCCTGAA AAAGCCCGCG ACGTGCTGGC CTACACCGCC
GCCGATGCGC TGATGGTCGG CCGCGCCGCG CAGGGCCGGC CCTGGATTTT TCGCGAGCTG
ACGCATTTCA TGGCCACCGG CACGCACCTG GCGCCGCCGC TGGTGGCCGA TGTCAAGTGC
CTGCTGCTCG ACCATCTGCT TGACCACTAC GCGCTGTACG GTGAATTCAC CGGCGTGCGC
ACGGCGCGCA AGCACATCGG CTGGTATGTG AAGACCCTGC CGGGCGGAGA AGCATTTCGC
GGGCAGATGA ACGGGCTGGA GGATTGCCGG GCGCAGCTTG AGGCGGTGAA TGACTATTTT
GAGGCCTTAA GCGAGCGGAT GGACCGCATC CCGGCCAGTA CCCAGGGCCA TGGCGCCTCG
GTACAGGAAC GAATGAACAA CGATAAAAAT GAGGAGGAAG CTGCACTATG A
 
Protein sequence
MNIGPYALAN NVFVAPMAGV TDRPFRQLCK KLGAGYAVSE MVTSRRDLWD TLKTSRRANH 
EGEAAPIAVQ IAGTDARMMA DAAAYNLDRG AQIIDINMGC PAKKVCNKWA GSALMQDETL
ALQIIEAVVA ACLPHGVPVT LKMRTGWAQS HKNALSIARA AESAGIQMLA VHGRTREQGY
KGLAEYDTIA EVKAALRIPV VANGDIDSPE KARDVLAYTA ADALMVGRAA QGRPWIFREL
THFMATGTHL APPLVADVKC LLLDHLLDHY ALYGEFTGVR TARKHIGWYV KTLPGGEAFR
GQMNGLEDCR AQLEAVNDYF EALSERMDRI PASTQGHGAS VQERMNNDKN EEEAAL