| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3258 |
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| Symbol | |
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| ID | 4686208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3459112 |
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| End bp | 3460854 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639836271 |
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| Product | single-stranded-DNA-specific exonuclease RecJ |
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| Protein accession | YP_983477 |
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| Protein GI | 121606148 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCC AGGTACGCGA CGTGCCCCCG CGCAGCCTCT GGGCGCTGCA GCAGGCCGGC
ATCCATCCTT TGCTGGCGCA GTTGTATGCG GCGCGCGGCG TCCATGCGGC GGCAGAACTT
GACGACGGGC TGGCCCGGCT GCTGCCGCCC TCATCGCTCA AGGGTGCGCG CGAAGCGGCC
ATCCTGCTGG CCGATGCGAT GGCCGCAGGC AAGCACATCT GCGTGGTCGC CGACTACGAC
TGCGACGGCG CCACCGCCTG CGCCGTGGCG CTGCGCGGCC TGAAGCTGCT GGGCGCCACA
AACGTCGGCT ACCTCGTTCC CGACCGGGTG GTTGACGGCT ACGGCCTGAC CGCGCCGATT
GCCGAGCGCG TCAAGGCGAC CGGCGCCGAT GTGCTGGTCA CCGTGGACAA CGGCATTGCC
AGCATCGACG GCGTGGCGCG CGCCAAGGCG CTGGGCCTGC AGGTGCTGGT GACCGACCAC
CATTTGCCCG CGCTGTTCAA CGAAAAAATC GGCCTGCCCG ACGCCGACGT GATCGTCAAC
CCGAATCAGC CCGGCTGCGG CTTTGAAAGC AAGTCCATGG CCGGCGTTGG CGTGATGTTT
TACGTGCTGC TGGCGCTGCG CGCCGAATTG CGCGAGCGCG GCGCGTTTGA CGCAGCCCAT
CAGCCCAAGC TCGACACGCT GCTGCCGCTG GTCGCACTGG GTACGGTGGC CGATGTCGTC
AAGCTGGACG CCAACAACCG CCGCCTGGTG GCGCAGGGCC TCAAGCGCAT CCGGGCCGGC
GCCCTGCCCG CCGGCATCGC CAGCCTGTTC AAGGCCGCCG GCCGCCAGGC GCCCGCCGCG
ACGACCTTCG ATTTCGGTTT CGCGCTCGGC CCGCGCATCA ATGCCGCCGG CCGGCTGGCC
GACATGCGGC TGGGCATCGA ATGCCTGCTG ACCGACGACC CAGCACGCGC CGACGAGCTG
GCGCAGATGC TCGACGGCAT CAACCGCGAA CGCCGCCAGA TCGAGTCCGG CATGCGCGAC
CAGGCGCAAC TGGCGGCCGA CGCGATGATC GACGAGGACG AGGAACCGCC GCCAGCGATT
GCGATTTTTG ACCCCGAATT CCATGAAGGC GTGGTCGGCA TCGTCGCCTC GCGCATCAAA
GACAAGCTGC ACCGGCCGAC CTTTGTGTTC GCCGCCAGCC AGGCGCCGGG CAAGGAGCAT
GAACTCAAGG GCTCGGGCCG CTCGATTCCG GGTTTTCACC TGCGCGATGC GCTGGACCTG
GTCGCCAAGC GCCATCCGGG CGTGCTGCTG CGCTTTGGCG GCCATGCGAT GGCGGCCGGC
TGCACGATTG CCGAGGAAAA TTTCGAGGCC TTCGAGTACG GGCTGCAGCA GGTGGCCCGT
GAATGGCTGG ACGCCGCCAC CCTGACGCGC CGGCTGGAAA CCGACGGCCC GCTGGCGCCC
GAATACCGGC GCGCCGACCT GGTCGATACG CTGCACAAGG AAGTCTGGGG CCAGGGCTTT
GCCGCGCCCA CCTTCAGCGA AGAGGTCGAG GTGGTGTCGC AGCGGCTGGT CGGTGACGAC
AAGCATTTGT CCCTAAAGCT CAAGCACCGG GGAGAGCCGG TGGACGGCAT CTGGTTCGGT
CACACCGACG CCCTGCCGGC GCGCGTCACG CTGGCGTTCC GGCTCGATAC CAATGAGTGG
AAAGGCATCC GGCGCGTGCA GTTTCTCATC GAAGCGGCGG AAATCCGGCC CCAGGAGCGA
TAA
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| Protein sequence | MKIQVRDVPP RSLWALQQAG IHPLLAQLYA ARGVHAAAEL DDGLARLLPP SSLKGAREAA
ILLADAMAAG KHICVVADYD CDGATACAVA LRGLKLLGAT NVGYLVPDRV VDGYGLTAPI
AERVKATGAD VLVTVDNGIA SIDGVARAKA LGLQVLVTDH HLPALFNEKI GLPDADVIVN
PNQPGCGFES KSMAGVGVMF YVLLALRAEL RERGAFDAAH QPKLDTLLPL VALGTVADVV
KLDANNRRLV AQGLKRIRAG ALPAGIASLF KAAGRQAPAA TTFDFGFALG PRINAAGRLA
DMRLGIECLL TDDPARADEL AQMLDGINRE RRQIESGMRD QAQLAADAMI DEDEEPPPAI
AIFDPEFHEG VVGIVASRIK DKLHRPTFVF AASQAPGKEH ELKGSGRSIP GFHLRDALDL
VAKRHPGVLL RFGGHAMAAG CTIAEENFEA FEYGLQQVAR EWLDAATLTR RLETDGPLAP
EYRRADLVDT LHKEVWGQGF AAPTFSEEVE VVSQRLVGDD KHLSLKLKHR GEPVDGIWFG
HTDALPARVT LAFRLDTNEW KGIRRVQFLI EAAEIRPQER
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