| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3217 |
|---|
| Symbol | |
|---|
| ID | 4687877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3417600 |
|---|
| End bp | 3418853 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639836230 |
|---|
| Product | Fmu (Sun) domain-containing protein |
|---|
| Protein accession | YP_983436 |
|---|
| Protein GI | 121606107 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCTA ACGCCTTACT CGACTGTTGT ACCGAGCTTC TCAAGCAGGT TCTTAAATTT
GACCATCCCG CCGACATGGT GGTGTCGCGC TATTTCCGCG AAATGCGGCT TGGCCCCCGC
GAGCGGGCCA CCGTGGCTGA AACCATCTAC GGCGTGCTGC GCAAGAAAAA TCTCTACACC
TACCTGGCCC AGCACGGCAG CGGCGTGCCT GAGCGGCGGC TGGCGATTCT CGGATTCGCC
GCCCCGCGTG ATTTTCTGTA TGGCGCGCTG ACCGAGCAGG AAGAGGACTG GCTGTCGCGC
TGCGACCAGG TCAAACCGTC AGACCTGATG GAACTGCACC GCCACAACTT GCCGCAGTGG
CTGGTCGAGC CGCTCAAGGC GCAACTCGGC GATGATTTCT GGCCGCTGGT CGAAAGCCTC
AACACGCAGG CCGGACTTGA CCTGCGCGTC AACACCTTGA AGGATAAAAG GGCTGATGTG
CAGAAGGAGC TTGCGCGGGC AGCTATTAAA ACAGTAGCAA CGCCGTATTC GCCGTGGGGC
TTGCGCCTGG AGGGCAAGCC GCAGCTGGCC AACGTGGACG CTTTCAAGCG TGGCGCGATT
GAAGTGCAGG ACGAAGGCTC GCAACTGCTG GCCCTGCTGG TCGATGCCAA GCGCGGCGAA
ATGGTGGTCG ATTTCTGCGC CGGAGCCGGC GGAAAAACCC TGGCGCTGGG CGCTTCGATG
CGCACGACCG GGCGGCTCTA CGCCTTTGAC ACGTCGGCGC ACCGGCTGGC CGCGCTCAAG
CCGCGCCTGG CGCGCAGCGG GCTGTCGAAC GTGCATCCGG TCGCCATTGC GCATGAACGC
GATGACCGCA TCAAGCGGCT GGCCGGCAAG ATCGACCGCG TGCTGGTCGA TGCGCCGTGC
TCGGGCCTGG GTACGCTGCG GCGCAACCCG GACCTGAAAT GGCGCCACAA CCCGAAGGCG
ATTGAAGAGC TGACCGCCAA GCAGACCGCC ATTTTGCAGA GCGCCGCGCG CCTGGTGAAG
CCGGGCGGAC GGCTGGTGTA TGCCACCTGC AGCATCCTGC GCGAGGAAAA CGAGGCGATT
GCCGAGGCGT TCAGCGCCGC GAATCCAGAC TTCCAGGTTG TGGAAGCGGC GCCGCTGCTG
ACGCATATCG GGGTCGAGCA TGCGGACAAA CTCTGCCGTG GACCGTATCT GCGGCTCTGG
CCTTACCTGC ACCAGACCGA TGGCTTCTTT GCAGCCGTCT GGCAAAAGGC CTGA
|
|---|
| Protein sequence | MHPNALLDCC TELLKQVLKF DHPADMVVSR YFREMRLGPR ERATVAETIY GVLRKKNLYT
YLAQHGSGVP ERRLAILGFA APRDFLYGAL TEQEEDWLSR CDQVKPSDLM ELHRHNLPQW
LVEPLKAQLG DDFWPLVESL NTQAGLDLRV NTLKDKRADV QKELARAAIK TVATPYSPWG
LRLEGKPQLA NVDAFKRGAI EVQDEGSQLL ALLVDAKRGE MVVDFCAGAG GKTLALGASM
RTTGRLYAFD TSAHRLAALK PRLARSGLSN VHPVAIAHER DDRIKRLAGK IDRVLVDAPC
SGLGTLRRNP DLKWRHNPKA IEELTAKQTA ILQSAARLVK PGGRLVYATC SILREENEAI
AEAFSAANPD FQVVEAAPLL THIGVEHADK LCRGPYLRLW PYLHQTDGFF AAVWQKA
|
|---|
| |