| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3153 |
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| Symbol | |
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| ID | 4687118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3348418 |
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| End bp | 3350472 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639836165 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_983372 |
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| Protein GI | 121606043 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCATGTAA CTATATTGAT ACATGTCAGT GTTTCGCCAG CATGGAATCG CATAATTAAA
TCGTTTCCAC TTCAAAAAAA GGCCATTTTG CTAACAAACT CCGGCTTTCT TCCGACCCGT
CCGGACTCCC TGAGTCCTGA AAAAGCGCGC CCAACCACGC TGACCCAGTT GCTCAGGGCG
ACGCAGGATC TGAAGCTTGA ACCCATCATC ACGCTGGCGA CGGCCCTGGA GCAACTCGGA
TTGCTCCATC CCCGCGAGAT TGAGATGCTG ACGGATGAAG ATCCGCAGTT GCTGCGCAGC
CGGTCGCCAG AGTTGGTGGA GCGCCTGCTG CTGACGCCTG AAGACCTGCA CCATGCGCTG
GCGCGCACCG CCGGCATCGT CGAGGTGGAT GCGGCCAATT TCATGCTGCC TGGGCGGGGG
TTCGATGGCC AGTTGCTGCG CAAAATGCGC AACCACGACC TGCTGTTCCT GGGGGAGGCT
GACGAGACGC TGTTCATCGC GAGCTGGCAT CCCACTGACG AGGACATGCA TCACCACCTG
TGCACCCTGA CCGGCCGTAG CGTGCGGGTA GTCTGGGCTG ACCGTGATGC GATTGTGGCG
CGCCTGGAGC GCATGGACCC CCTGGCGCCA AAATGGACCC ACGAGCATGA CATGTTCACG
GCGCACCAGG CCGTCAAGCG CAAGGCATTG ACAACGCCGC TTCCAGCCAC CAACGCCGTG
ACCGTCCACG ATCAGGACAT GGCGCATTTG ATGGACGAAG CCGTGCAGGG GCTGTCATCG
GTACAGCCGC GCAAAGCCCC GCAAGAGCTT GACGAGTCCA GCGATTCGCC CATCATGGTG
CGCATGGTCA AGCGCCTGAT CATGGACGCG CAGGCCCTGC ATGCGTCCGA TATTCACATC
GAGACCAATC CGGGCGAGGA GTTCAGCCGC ATCCGCCTGC GCCGCGACGG CGACCTGGAG
CTGTACCAGA AGCTCTCGCC CCGGCTGCGC GCGGCGATGG TGTCGCGCAT CAAGGTGATG
GCGCGGCTCG ATATTTCCGA GCATCGCCGG CCGCAGGACG GCAAGATCAG TTTCAGCGAG
TTCGGCGGCG ACCCCCTGGA ACTGCGGGTG TCCATCATGC CGACGCACGA CGGCATGGAG
GACGTGGTGA TGCGGCTGCT GGCTTCCTCG AAGCCGGTGC CGCTGGCCAA ACTGGGCCTG
CAGCCGCGCG ATGCCGAGGC GGTGGCGCGC ATGTCGGCGC GCTCCTTCGG CCTGATCCTG
GCGGCCGGCC CGACCGGATC GGGCAAGACC ACCACGCTGC ACTCGATGCT GGCCGAGATC
AACACCGAGG AGCGCAAAAT CTGGACCGCC GAGGATCCGA TAGAAATCAC CCAGCCCGGC
CTGCGCCAGG TGCAGGTCAA CCCGAAGATC GGGCTGACCT TTGCCAACGC CATGCGGGGG
TTCTTGCGGG CCGACCCGGA CGTCATCATG ATCGGCGAAA TCCGCGATAC CGAAACCGCC
AGGATTGTCA TTGAAGCCTC GCTGACCGGC CACCTGGTGC TGTCAACCCT GCACACCAAC
AGTGCCTCCG AGAGTGTCGT GCGCCTGCTG GACCTGGGCA TGGATGCGAT GAACTTCGCC
GATTCGCTGG TCGGCATCGT GGCGCAGCGG CTGGTCCGGT CGCTGTGCGC GCATTGTTCG
CAAAAGGAGC CGCTGCTGCC CGGGCAATTT TCTGAACTGG TCAAGGAATA CGTGCAGGCC
TCGCCCCTGA GCGAGGAAGA GGGCGCCCGG CGCCTGCTGG CCGCCGCCGG GGTTCAGACG
CCCGAGGAGG TCACGCTCAA AACGGCGCAG GGCTGCGACC ACTGCGGCGG CAAGGGCTAC
AAGGGGCGAA TGGGCATCTA TGAAATCCTG GAAAACAGCC CGACGCTGCG GCTGCTCATC
CAGCGCAATG CCCGGCCCAC CGAGATTTAT AAAGAGGCGA TTCGCTCGGG CATGCGCAGC
CTGCGCCATG ACGCGCTGGA AAAATGCTTT CAAGGCCTGA TCGACCTGCA TCAGGCGCGC
CTGGCTTATC TGTGA
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| Protein sequence | MHVTILIHVS VSPAWNRIIK SFPLQKKAIL LTNSGFLPTR PDSLSPEKAR PTTLTQLLRA
TQDLKLEPII TLATALEQLG LLHPREIEML TDEDPQLLRS RSPELVERLL LTPEDLHHAL
ARTAGIVEVD AANFMLPGRG FDGQLLRKMR NHDLLFLGEA DETLFIASWH PTDEDMHHHL
CTLTGRSVRV VWADRDAIVA RLERMDPLAP KWTHEHDMFT AHQAVKRKAL TTPLPATNAV
TVHDQDMAHL MDEAVQGLSS VQPRKAPQEL DESSDSPIMV RMVKRLIMDA QALHASDIHI
ETNPGEEFSR IRLRRDGDLE LYQKLSPRLR AAMVSRIKVM ARLDISEHRR PQDGKISFSE
FGGDPLELRV SIMPTHDGME DVVMRLLASS KPVPLAKLGL QPRDAEAVAR MSARSFGLIL
AAGPTGSGKT TTLHSMLAEI NTEERKIWTA EDPIEITQPG LRQVQVNPKI GLTFANAMRG
FLRADPDVIM IGEIRDTETA RIVIEASLTG HLVLSTLHTN SASESVVRLL DLGMDAMNFA
DSLVGIVAQR LVRSLCAHCS QKEPLLPGQF SELVKEYVQA SPLSEEEGAR RLLAAAGVQT
PEEVTLKTAQ GCDHCGGKGY KGRMGIYEIL ENSPTLRLLI QRNARPTEIY KEAIRSGMRS
LRHDALEKCF QGLIDLHQAR LAYL
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