| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3116 |
|---|
| Symbol | |
|---|
| ID | 4687136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3306301 |
|---|
| End bp | 3306969 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639836128 |
|---|
| Product | sugar transferase |
|---|
| Protein accession | YP_983335 |
|---|
| Protein GI | 121606006 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGAT TTTTTGACAT TCTTTTCACA AGCCTGGCCT TGCTGGTGTT GTCGCCGCTG
CTGGTGCCCA TTGCCATCGT GCTTCGCCTG ACAGGCGAGG GCGAGGTGTT CTTTCTGCAA
GACCGGGTCG GCAAGGGGGG CAAGGTATTC AAGCTTTACA AGTTTGCGAC CATGCTCAAA
GATAGCCCGA CCATGGGAAC GGGAACAGTC ACCGTGAAGA ACGATCCGCG CGTTCTGCCG
GTGGGGCGTT TTTTGCGCAA GACCAAGATC AATGAGTTGC CGCAGCTGAT TAATATTCTG
AAGGGAGACA TGTGCATTAT TGGCCCGCGC CCGCAAACCC AACGCTGCTT TGATGCGTTT
CCCCCGGCTG CGCAGCAGGC CATCAAAGAA GTTTTGCCGG GCTTGTCAGG CATTGGCTCC
ATCATGTTCA GGGACGAGGA AAATCTGCTG CATGGGCATG CCGACGCGCG TCATTTTTAT
GACCATGTGA TTGCGCCTTA CAAGGGCGCG CTGGAACAGT GGTACGTCAA AAATCAGGGC
TTGAGAACCT ATTTCATGCT GATCGGCTTG ACCCTGTGGG TGGTGCTGTT TCCGAAGTCC
ACTGCGGTGT GGCATGTTTT TGGCACTTTG CCGAAGCCGG AGCCCGAATT GGCGCGGGCG
TTTGGGTGA
|
|---|
| Protein sequence | MQRFFDILFT SLALLVLSPL LVPIAIVLRL TGEGEVFFLQ DRVGKGGKVF KLYKFATMLK
DSPTMGTGTV TVKNDPRVLP VGRFLRKTKI NELPQLINIL KGDMCIIGPR PQTQRCFDAF
PPAAQQAIKE VLPGLSGIGS IMFRDEENLL HGHADARHFY DHVIAPYKGA LEQWYVKNQG
LRTYFMLIGL TLWVVLFPKS TAVWHVFGTL PKPEPELARA FG
|
|---|
| |