| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3107 |
|---|
| Symbol | |
|---|
| ID | 4687541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3290336 |
|---|
| End bp | 3291850 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639836120 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_983327 |
|---|
| Protein GI | 121605998 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.202807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCA CTGCTTTGAG CAATACCCGG CTGATCGCGG CGCTGCTGGC CGCAGGCGCC
ATTGGCGGGG CCGGAGTCGG CGCATTCAAC ATGGCGCACA CACCGGCCAT CGCAGCCCTG
TCAGCCCCGG CCGTCAGCAC GGCCGCCACG CCCATGGCCC TGCCCGACTT CTCGCAGATC
ACCGAACGCT ACGGCCCGTC GGTGGTCAAC ATCAGCGTGA CCGGCAGCAC CAAGGTTTCC
AACGACTCCC CGCTGGCGCA GGGCGGCGGT GACGATGAAG AAGGCGACCC GCTGCTGGGC
AGCCCGCTGG GCGAATTGTT CCGCCGCTTC CAGCAGGGCC AGGGCCAGCG TCCCGGCGCG
GGCCGGGGCG GAGCGCCCGA GGAAATGCCG ACGCGCGGCC AGGGTTCGGG CTTCATCGTC
AGCGGCGACG GCATCATCCT GACCAATGCC CATGTGGTGC GCGGCGCCAA GGAAGTCACC
GTCAAGCTGA CCGACCGGCG TGAATTCCGC GCCAAGGTGC TGGGCGCCGA CGCCAGGACC
GACATCGCCG TGCTGAAGAT CGCCGCCAGC AACCTGCCGG TCGCCACGCT GGGCAAGACC
AGCGACCTCA AGGTCGGCGA ATGGGTGCTG GCCATCGGCT CACCCTTCGG TTTCGAAAAC
ACGGTGACCG CCGGCGTCGT CAGCGCCAAG GGCCGCTCGC TGCCCGACGA CAGCGCCGTG
CCCTTCATCC AGACCGATGT CGCCATCAAC CCCGGCAACT CGGGCGGCCC GCTGTTCAAC
GCGCGCGGCG AAGTGGTCGG CATCAACTCG CAAATCTACA GCCGCAGCGG CGGCTACCAG
GGCGTGTCGT TCGCCATCCC GATTGACGTG GCGACCAAGA TCAAGAACCA GATCGTCGCC
ACCGGCAAGG TCGAGCATGC GCGGCTGGGC GTGTCGGTGC AGGAAGTCAA CCAGGCGTTC
GCCGATTCCT TCAAGCTCGA CAAGCCCGAA GGCGCGCTGG TGTCAATGGT TGAAAAAGGC
AGCCCGGCCG ACAAGGCGGG CCTGCAGCCG GGCGACGTGA TCCGCCAAGT CAACGGCCAG
CCGATTGTCT CGTCGGGCGA CCTGCCGGCG GTGATTGGCC TGGCGGCGCC GGGCGACAGC
ATCAAGCTCG ATGTCTGGCG CCAGGGCGCG GCCAAGGAAA TCACGGCGCG GCTGGCCAAT
GCCGACGACA AGGCCGCGCA GGTCGCCAGC AAGAAAGAGG CGCCCGGCCA GGGCAAGCTG
GGCCTCGCGC TGCGTCCGCT GCAGCCCGAC GAACAGCAGG AAGCTGGCAT TGACAGCGGC
CTGCTGGTCC AGCAGGCCAG CGGCCCGGCG GCGCTGGCCG GCGTGCAGGC GGGCGACGTG
CTGCTGTCGA TCAACGGCGT TCCCGTGAAA AGCATCGACC AGGTGCGCGC CACCGTGGCC
AAGTCGCAAA AATCAGTGGC GCTGCTGATT TTGCGCGGCG ACACCCGGAT TTTCGTGCCG
GTGAATTTGG GCTGA
|
|---|
| Protein sequence | MKSTALSNTR LIAALLAAGA IGGAGVGAFN MAHTPAIAAL SAPAVSTAAT PMALPDFSQI
TERYGPSVVN ISVTGSTKVS NDSPLAQGGG DDEEGDPLLG SPLGELFRRF QQGQGQRPGA
GRGGAPEEMP TRGQGSGFIV SGDGIILTNA HVVRGAKEVT VKLTDRREFR AKVLGADART
DIAVLKIAAS NLPVATLGKT SDLKVGEWVL AIGSPFGFEN TVTAGVVSAK GRSLPDDSAV
PFIQTDVAIN PGNSGGPLFN ARGEVVGINS QIYSRSGGYQ GVSFAIPIDV ATKIKNQIVA
TGKVEHARLG VSVQEVNQAF ADSFKLDKPE GALVSMVEKG SPADKAGLQP GDVIRQVNGQ
PIVSSGDLPA VIGLAAPGDS IKLDVWRQGA AKEITARLAN ADDKAAQVAS KKEAPGQGKL
GLALRPLQPD EQQEAGIDSG LLVQQASGPA ALAGVQAGDV LLSINGVPVK SIDQVRATVA
KSQKSVALLI LRGDTRIFVP VNLG
|
|---|
| |