| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3065 |
|---|
| Symbol | |
|---|
| ID | 4686807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3238292 |
|---|
| End bp | 3239767 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836078 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_983285 |
|---|
| Protein GI | 121605956 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGAC TGATGAAGAT GCTTGAATTG AACCTGAAAC CCCTGCGCCC TTACCTGACC
GCAGGCCTGA TGGCGATTGC GGCCACCACT GCCGTCCTGC CGGTGACGCC GGTGTGGGCG
CAGACCCGCA CGCTGCCTGA CTTTACCGAT CTGGTGGACC AGGTGGGGCC GTCGGTGGTC
AACATCCGGA CCCTGGAAAA AGTCAAGGCA TCGGCCGCAG GAAATATTGA CGAGCAGATG
CTGGAGTTTT TCAAGCGCTT CGGCATTCCC GTGCCGCCCA ACACACCGCG CGCGCCGCGC
CCTGATCCGA GCCAGCCGGA CGAAGACCAG CCGCGTGGCG TGGGCTCGGG ATTCATCCTC
ACGACGGACG GCTTTGTCAT GACCAATGCC CATGTGGTCG AAGGTGCGGA TGAAGTCCTC
GTCACCCTGA CGGACAAGCG CGAATTCAAG GCCAGGATCA TTGGCGCCGA CAAGCGCAGC
GATGTGGCTG TGGTCAAGAT CGAGGCAACC GGCCTGCCGG CCGTCAAGAT TGGCGACCTG
GGCCGTCTGC GGGTGGGCGA GTGGGTGATG GCCATCGGTT CGCCGTTCGG GCTTGAAAAC
ACGGTGACGG CCGGCATCGT GAGCGCCAAG CAGCGTGACA CCGGCGACTA TCTGCCTTTT
ATCCAGACCG ATGTGGCCAT CAATCCCGGC AACTCGGGCG GCCCGCTGAT CAACATGCGC
GGCGAGGTCG TCGGCATCAA CAGCCAGATC TATTCACGTT CCGGCGGCTT CCAGGGTATT
TCGTTCTCCA TCCCGATTGA CGAGGCGATG CGCGTGTCGG AACAACTGCG CATCAGCGGC
AAGGTGACGC GCGGTCGCAT CGGCGTGCAG ATTGACCAGG TGACCAAGGA CGTGGCCGAA
TCCATCGGCC TGGGCAAGGC GCAGGGCGCG CTCGTCAGGG GCGTGGAGAG TGACGCCCCT
GCCGAGAAAG CCGGCATCGA AGCGGGCGAC ATCATCACCA AGTTTGAAGG CCGGCCGATT
GACAAGGCCA GCGACCTTCC GCGCATGGTC GGCAATGTCA AGCCGGGCAC CAAGGTGACA
GTGACCGTGT TCCGGCGCGG CGCCACCAAA GACCTGTCAG TCACCATTGC CGAAGTCGAG
GCCGACAAGC CTGCCCGCCC GGCTGCCAAG TCCGAATCCA AGCCGCCTGT GGCCGGTCCC
GCGCAGGCAT TGGGCCTGGC GGTGAGCGAG ATCACGGATG CACAGAAAAA GGAACTCAAT
GTCAAGGGCG GCGTCAAGGT CGATACGGTC GATGGCGCGG CCGCAAGAGC GGGACTGCGC
GAAGGCGATG TGATTGTGTC GATTGCCAAC ACGGAGGTGA CCGGCGTCAA GGGATTCGAG
GCGGCGCTGG CAAAAATTGA CAAGTCCAAA AACATCACCG TGCTGGTCCG GCGCGGTGAA
CTGGCGCAAT TTGTCATCAT CAAGCCGGCG CGTTGA
|
|---|
| Protein sequence | MMRLMKMLEL NLKPLRPYLT AGLMAIAATT AVLPVTPVWA QTRTLPDFTD LVDQVGPSVV
NIRTLEKVKA SAAGNIDEQM LEFFKRFGIP VPPNTPRAPR PDPSQPDEDQ PRGVGSGFIL
TTDGFVMTNA HVVEGADEVL VTLTDKREFK ARIIGADKRS DVAVVKIEAT GLPAVKIGDL
GRLRVGEWVM AIGSPFGLEN TVTAGIVSAK QRDTGDYLPF IQTDVAINPG NSGGPLINMR
GEVVGINSQI YSRSGGFQGI SFSIPIDEAM RVSEQLRISG KVTRGRIGVQ IDQVTKDVAE
SIGLGKAQGA LVRGVESDAP AEKAGIEAGD IITKFEGRPI DKASDLPRMV GNVKPGTKVT
VTVFRRGATK DLSVTIAEVE ADKPARPAAK SESKPPVAGP AQALGLAVSE ITDAQKKELN
VKGGVKVDTV DGAAARAGLR EGDVIVSIAN TEVTGVKGFE AALAKIDKSK NITVLVRRGE
LAQFVIIKPA R
|
|---|
| |