| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3027 |
|---|
| Symbol | |
|---|
| ID | 4690045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3196850 |
|---|
| End bp | 3199465 |
|---|
| Gene Length | 2616 bp |
|---|
| Protein Length | 871 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836040 |
|---|
| Product | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
|---|
| Protein accession | YP_983247 |
|---|
| Protein GI | 121605918 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1049] Aconitase B |
|---|
| TIGRFAM ID | [TIGR00117] aconitate hydratase 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.8234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCAG GATTTTTGCA AACCTACCGC AGCCATGTTG CCGAGCGTGC CGTACTGGGC
ATTCCACCCC TGCCTTTGTC AGCTCAGCAA ACCGGCGAGG TCATTGAACT GCTGAAGAAT
CCGCCCGAGG GCGAAGAAGC CTTCCTGCTG GACCTGATCA CCCACCGCGT TCCTGCCGGC
GTTGACATGG CTGCCAAAGT CAAGGCCAGC TACCTGGCTG CCGTGGCCCA CGGTACCGAA
AAATGCTCCC TGATTTCGCG TGAAAAAGCC ACGCAGTTGC TGGGCACCAT GCTGGGCGGC
TACAACATCA GCCCGATGGT CGAGTTGCTC GACGACGCGG AAGACAGCGT GGCCACGCAA
GCGGCCAGCG GCCTGAAGAA CACCCTGCTG ATGTTCGACC AGTTCCACGA CGTGCAGGAA
AAGGCCGAAA AAGGCAACAA ATACGCCAAG GCCGTGCTGC AAAGCTGGGC CAATGCCGAA
TGGTTCACCA GCCGCCCCGA AGTGCCGGAG TCGATCCAGC TGACCGTGTT CAAGGTCGCC
GGCGAGATCA ACACCGACGA CCTGTCGCCC GCGCCCGACG CCTGGAGCCG CCCCGACATT
CCGCTGCATG CGCTGGCCAT GCACAAGAAT GCCCGTCCCG GCGTCACGCC TGAAGAAGAC
GGCAAGCGCG GCCCGGTCAG GTTCATCGAA GAGCTCAAGG CCAAGGGCAA CCTGGTGGCT
TATGTCGGCG ACGTGGTCGG AACCGGCTCC TCGCGCAAGT CCGCCACCAA CTCGGTGCTG
TGGTTCACCG GCGAAGATAT TCCCTTCGTG CCGAACAAGC GCTTTGGCGG CGTTTGCCTT
GGGTCAAAGA TCGCTCCGAT TTTCTACAAC ACTATGGAAG ACTCGGGCGC GCTGCCGATT
GAACTCGACG TGAGCCAGAT GGCCATGGGC GACGTGATCG AACTGCGCCC CTACGACGGC
AAGGCGCTGA AAGACGGCCA GGTCATTGCC GAATTCAAGC TCAAAAGCGA TGTGCTGTTC
GACGAAGTGC GCGCCGGTGG CCGCATTCCG CTGATCGTCG GCCGAGGCCT GACCGCCAAG
GCGCGCTTTG CGCTGGGCCT GCCGGTGTCC ACCCTGTTCC GCCTGCCGCA GAATCCCGAA
GACAGCGGCC GCGGCTTCAC GCTGGCGCAA AAAATGGTCG GCCGCGCGGT CGGCCTGCCT
GAAGGCCAGG GCGTTCGTCC CGGCACCTAT TGCGAACCCA AGATGACCTC GGTCGGCTCG
CAGGACACCA CCGGCCCGAT GACCCGCGAC GAGCTGAAAG ACCTGGCCTG CCTGGGCTTT
TCCGCCGACC TGGTCATGCA GTCGTTCTGC CACACCGCCG CCTACCCCAA GCCGGTCGAT
GTGAAGATGC ACCACGAACT GCCCGACTTC ATGAGCGACC GCGGCGGCAT CCCGCTGCGC
CCGGGTGACG GCATCATCCA CAGCTGGCTC AACCGCATGC TGCTGCCCGA CACCGTCGGC
ACCGGCGGCG ACAGCCACAC GCGCTTCCCC ATCGGCATCA GCTTTCCGGC CGGCTCCGGC
CTGGTGGCCT TTGGCGCCGC CACCGGCGTG ATGCCGCTGG ACATGCCTGA GTCGGTGCTG
GTGCGCTTCA AGGGCGAACT GCAACCCGGC ATCACCCTGC GTGACCTGGT CAACGCGATT
CCGCTGTACG CCATCAAGGC CGGCTTGCTG ACCGTGGCCA AGCAGGGCAA GGTCAACATT
TTCTCGGGCC GCATCCTCGA AATCGAAGGC TTGCCCGACC TGAAGGTCGA GCAGGCGTTC
GAGCTGAGCG ATGCCTCGGC CGAGCGTTCC GCAGGCGGCT GCACGGTGCA CCTGAACAAG
GAACCGATCA TCGAGTACAT CACCAGCAAC ATCACGATGC TGAAGTGGAT GATTGCCACC
GGTTACTCGG ACGTGCGCAC CATCAAGCGC CGCATCGCCG CGATGGAAAA GTGGCTGGCC
GACCCGCAAT TGCTCAAGGG CGATGCCGAT GCCGAATACG CCGCCGTCAT TGAAATCGAC
CTGGCCGACA TCCACGAGCC CATCGTGGCT TGCCCGAACG ATCCGGATGA TGTGAAAACC
CTGAGCGACG TAGCCGGTGC CGTCATCGAC GAAGTGTTCA TCGGCAGCTG CATGACCAAC
ATCGGCCATT TCCGCGCCGC TTCCAAGCTG CTTGAAGGCA AGCGCGACAT TCCGGTCAAG
CTTTGGATGG CACCCCCGAC CAAGATGGAT GCCAAGCAGT TGAGCGAAGA AGGCCATTAC
GGCGTGCTGG GTTCGGCCGG CGCGCGCATG GAAATGCCGG GCTGCAGCCT GTGCATGGGC
AACCAGGCGC AGGTGAAAGA GGGCGCAACG GTGTTCTCGA CCTCGACGCG CAACTTCCCG
AACCGCCTGG GCAAGAACTC GTTTGTCTAT CTGGGTTCCG CCGAACTGGC CGCCATCTGC
TCCAAGCTGG GCCGGATTCC GACCAAGGCC GAGTACATGG CCGACATGAC CGTGCTGACG
GCCGCCAGCG ACAAGGTGTA CCAGTACCTG AACTTTGACC AGGTCAAGGA TTACACCGAC
ATGGCCGATA CGGTCAAGGA CGGCGTGGCT GCATAA
|
|---|
| Protein sequence | MSSGFLQTYR SHVAERAVLG IPPLPLSAQQ TGEVIELLKN PPEGEEAFLL DLITHRVPAG
VDMAAKVKAS YLAAVAHGTE KCSLISREKA TQLLGTMLGG YNISPMVELL DDAEDSVATQ
AASGLKNTLL MFDQFHDVQE KAEKGNKYAK AVLQSWANAE WFTSRPEVPE SIQLTVFKVA
GEINTDDLSP APDAWSRPDI PLHALAMHKN ARPGVTPEED GKRGPVRFIE ELKAKGNLVA
YVGDVVGTGS SRKSATNSVL WFTGEDIPFV PNKRFGGVCL GSKIAPIFYN TMEDSGALPI
ELDVSQMAMG DVIELRPYDG KALKDGQVIA EFKLKSDVLF DEVRAGGRIP LIVGRGLTAK
ARFALGLPVS TLFRLPQNPE DSGRGFTLAQ KMVGRAVGLP EGQGVRPGTY CEPKMTSVGS
QDTTGPMTRD ELKDLACLGF SADLVMQSFC HTAAYPKPVD VKMHHELPDF MSDRGGIPLR
PGDGIIHSWL NRMLLPDTVG TGGDSHTRFP IGISFPAGSG LVAFGAATGV MPLDMPESVL
VRFKGELQPG ITLRDLVNAI PLYAIKAGLL TVAKQGKVNI FSGRILEIEG LPDLKVEQAF
ELSDASAERS AGGCTVHLNK EPIIEYITSN ITMLKWMIAT GYSDVRTIKR RIAAMEKWLA
DPQLLKGDAD AEYAAVIEID LADIHEPIVA CPNDPDDVKT LSDVAGAVID EVFIGSCMTN
IGHFRAASKL LEGKRDIPVK LWMAPPTKMD AKQLSEEGHY GVLGSAGARM EMPGCSLCMG
NQAQVKEGAT VFSTSTRNFP NRLGKNSFVY LGSAELAAIC SKLGRIPTKA EYMADMTVLT
AASDKVYQYL NFDQVKDYTD MADTVKDGVA A
|
|---|
| |