| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3017 |
|---|
| Symbol | |
|---|
| ID | 4687964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3184175 |
|---|
| End bp | 3184927 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639836030 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_983237 |
|---|
| Protein GI | 121605908 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCGA ACGACAAAGT GGCACTCGTG ACCGGTGCGG GCACCGGCAT TGGCAAGGAG
GTGGCGCTGG CGCTGGCGGG CGCGGGCTAC CGCGTGGTGC TGGCCGGGCG GCGCAGCGAG
CCGCTCCATG AAGTCGCCTT GCAGGCCGGC GCGGACCGCG CCTTGGCGGT GGCGACCGAT
GTCAGCCGGC CCGAATCGGT CGATGCCCTG TTTGCCGCCA TCAAGGAAAA GTTTGGCCGC
CTCGACGTGC TGTTCAACAA TGCGGGCGTC AATTCGCCCA GGGCCAGCTT TGAAGACCTG
AGCTTCGAGC AGTGGCAAAA CGTGGTCAAC ATCAACCTGA CGGGTTCATT TTTGTGCGCG
CAGGGCGCCT TCAGGCTGAT GAAGGCGCAA CTGCCGCAGG GCGGCCGCAT CATCAACAAC
GGCTCGATCT CGGCCCACGC GCCCCGCCCG AATTCGGCGC CCTATACAGC GACCAAGCAT
GCCATCACCG GCCTGACCAA GGCGATTTCG CTCGATGGCC GAAAGTACAA CATCGCCTGC
GGCCAGATCG ACATCGGCAA CGCCCTGACC GAGCTTTCCG CGCGCATGGC CACCGGCGTG
CCGCAGGCCA ATGGCGAGAT TGCCATCGAG CCGATGATGG ACGCGAAGGA AGTGGCCGAT
GCGGTGGTTC ACATGGCGGG GCTGCCCTTG TCCACCAACA TCCAGTTCAT GACCATCATG
GCCACCAAAA TGCCGTTCGT CGGACGCGGC TGA
|
|---|
| Protein sequence | MNSNDKVALV TGAGTGIGKE VALALAGAGY RVVLAGRRSE PLHEVALQAG ADRALAVATD
VSRPESVDAL FAAIKEKFGR LDVLFNNAGV NSPRASFEDL SFEQWQNVVN INLTGSFLCA
QGAFRLMKAQ LPQGGRIINN GSISAHAPRP NSAPYTATKH AITGLTKAIS LDGRKYNIAC
GQIDIGNALT ELSARMATGV PQANGEIAIE PMMDAKEVAD AVVHMAGLPL STNIQFMTIM
ATKMPFVGRG
|
|---|
| |