Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3005 |
Symbol | |
ID | 4688030 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 3171334 |
End bp | 3173451 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639836018 |
Product | TonB-dependent receptor |
Protein accession | YP_983225 |
Protein GI | 121605896 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAACT TTTTTTCAAA AAATCCATGC ACAGCGCCTG TACAGCCCGA TTTTCCACGC CACCGCGTCG GACAGGCCTG CGCCGTGTTT CTTGTCCTGG CCGCGGCGGC GCCCATCAGC CATGCGCAGG AAACCACGAA CCAGGCCTTG TCGGAAGTCG TCATCAGCGC CAGCCGCGCC GAGCAGCGGC GCTTTGATGC GCCGGGCGCC ATCGACGCGG TGCAGGTCGA TCCGTTTCGC ACCGCCTCGC CGCTGGTCAA CCTGTCCGAA CTCATGGGCG GCGTGGCGGG CCTGCAGATC CGCGACCGGC AGAATTTCGC GCAGGACCTG CAACTGTCCG TGCGCGGCTT CGGCACGCGC TCGACCTTTG GGGTTCGCGG CGTGCGCATT TTGATCGACG GCATTCCGGC CACCATGCCC GACGGCCAGG GCCAGGCGGC CACCGCCAGC CTGATGTCGG CCAAGCGCAT CGAGCTGCTG CGCGGCCCGC TGGCGCAGCT CTACGGCAAT GCGGCTGGCG GCGTGCTGCA GGTCTTCACC AAAGACCCGC CGGTCACGCC CGGCAAACCC GACTACAGCC TGTCGGCCGG CGCCGGCTCC GACGGCCAGC GCCACGTTGC CGCCGGCATC GCGGGCGGCA GCGAGACACT GGGCGGGCTG CTCGATGTGT CGCGCTACTC GACCGACGGT TTTCGGGACC ACAGCGCGGC CCGGCGCGAG CAACTCAACG CCAAGGTGGT CGCCAAGCCT TCCGCCGACA CCACGCTGAC CGGCATCGTC AACCTGTTCA ACCAGCCGCT GGCCGAAGAC CCGCTGGGGT TGACGCATGC GCAGTTCAAC CAGAACCCGC GCCAGGTGAT TGCCAACGCC CTCGCCTTCA ACACCCGCAA GACCATTGAG CAAAACCAGG CCGGTTTGGT GGTCGAGCAC AAGCTGTCCG CCAGCGACAC GCTCAATGCG CGCGTCTATG GCGGCACGCG CAAGGTGGAC CAGAAGCTGG CGTTTCAGGC CAACGGCGTG GTCAACCTGG ACCGCACGTA TGGCGGCGTC GGCGCCAGCT GGACGCACGC GATGCAGGTC AACCAGTTGC CGGTGCGCTG GACCGTGGGC GTCGAGGCCG ACCAGCTGCG CGAAACCCGC AAGGGCTTTG ACAATATCGC CGGCAACAAC GGGGCCCTGC GCCGCAACGA AGACGACACG GCGCGCAACA CCGATGTGTT CGGCCAGATC GACTGGACCT TCACGCCCGA CTGGCAGGCG ATTGCCGGCG TCCGCGCCAG CCGCGTGCGC TTTGGCGTCG ATGACCGCTT CAACCCGGCG GCCAGCAGCA CCAGCGGCAG CGTTCAATAC CGCAACACCA GCCCGGTCGT CGGCCTGGTC TGGCATGCCG CCGACACGCT CAATGTGTAT GCCAACCTGG GCACCGGATT CGAGACGCCG ACGCTGGCCG AAAGCGCCTA CCGCCCCGGC GGCGCACCCG GACCCAACTT TGCGCTCAAG CCGTCCAAAA GCACGCAGGG CGAAATCGGC GTCAAGCTGC GCAGCGGCCT TCACAGTTTT GACGCCGCGC TGTTCGAAGC CCGGAGCAAG GACGAAATCG TGTCCTCGCA GTCGAGCGGC GGCCGCGCCA TTTTCCAGAA CGCCGACCGC ACCACCCGGC GCGGCCTGGA AGCCTCCTGG TCGGCGAACT GGGCGGGCGG CCTGGACACG CGACTGGCCT ACACCCTGCT CGATGCGCGC TTCAAGTCGC CCTACGCTGG CGCGCAGGGC CTGGTGCCGG TCGGCAACCG CCTGCCGGGC GCGCCACGGC ACAGCCTGTT TGCCGACGTG CAGGCCAGCA TCACCGACTC CGTCAGGGCT GGGCTGGAAA TGCGCCTGGA GAGCAAGACC TATGTGAACG ACCTCAACAG CGACGCGGCG CCGGGTTACG CGGTGTTCAA CGCGCGCCTG AGCCGGGAGT TCCGCTTCAA CGGCGCAAAA ATGCTGCTCT ATGGACGCAT TGACAACCTG TTCGACAAAA CCTATGCCGG GTCGCTGATC GTCAACGACA CCAACGCCCG CTTTTTTGAA GCCGCACCGG GGCGCCGCCT GTTCGTGGGC GTTCGCAGCA TGTTTTAA
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Protein sequence | MFNFFSKNPC TAPVQPDFPR HRVGQACAVF LVLAAAAPIS HAQETTNQAL SEVVISASRA EQRRFDAPGA IDAVQVDPFR TASPLVNLSE LMGGVAGLQI RDRQNFAQDL QLSVRGFGTR STFGVRGVRI LIDGIPATMP DGQGQAATAS LMSAKRIELL RGPLAQLYGN AAGGVLQVFT KDPPVTPGKP DYSLSAGAGS DGQRHVAAGI AGGSETLGGL LDVSRYSTDG FRDHSAARRE QLNAKVVAKP SADTTLTGIV NLFNQPLAED PLGLTHAQFN QNPRQVIANA LAFNTRKTIE QNQAGLVVEH KLSASDTLNA RVYGGTRKVD QKLAFQANGV VNLDRTYGGV GASWTHAMQV NQLPVRWTVG VEADQLRETR KGFDNIAGNN GALRRNEDDT ARNTDVFGQI DWTFTPDWQA IAGVRASRVR FGVDDRFNPA ASSTSGSVQY RNTSPVVGLV WHAADTLNVY ANLGTGFETP TLAESAYRPG GAPGPNFALK PSKSTQGEIG VKLRSGLHSF DAALFEARSK DEIVSSQSSG GRAIFQNADR TTRRGLEASW SANWAGGLDT RLAYTLLDAR FKSPYAGAQG LVPVGNRLPG APRHSLFADV QASITDSVRA GLEMRLESKT YVNDLNSDAA PGYAVFNARL SREFRFNGAK MLLYGRIDNL FDKTYAGSLI VNDTNARFFE AAPGRRLFVG VRSMF
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