| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2968 |
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| Symbol | |
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| ID | 4686980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3135438 |
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| End bp | 3136679 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639835981 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_983188 |
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| Protein GI | 121605859 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0222457 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGTTT TTCGTTTCAA GGGCGGCCTG ACCCGCACGA CCGTCGCCCA GCTCGCTTTT
GGCGCCACGG TCTGCCTGGC CGTCGTGGCA TGGCTGGTGC AGTCCATGCT GCCGGCGGCT
GCGGCTGAAT CAGCCGAGGA CGCCGTGGCG GCGCCCAGCG CCGCGCTCAC GGTGCAGCTG
GCCACCCCCA GCACCCAGGA CTGGCCCCAG ATCGTGCAGG CCAGCGGCCC GCTGGCGCCC
TGGCAGGAAG CGGTGGTCGG CACTGAGACT GGCAGCCTGC GCATCACCGA ACTGCTGGTG
GACGTGGGCA GCACGGTCAA GCGCGGGCAG CTGATGGCGC GCTTGGCCGA TGAGACGGTG
CAGGCTGACC TGAGCAAGCA AAATGCCGCG CTCGACCAGG CTAGGTTGAA CCTGTCGCAG
GCGCAGGCCA ACCTGCAGCG CACCAGGGCC GTGGCCGAAA GCGGCGCCCT GTCGGGCCAG
AAGATGGACG AATACATCAT TGACGAGGCC CTCAAGCGGG TGGCGCTGGC GTCCAGCGAG
GCGGACCAGA AAAGCACCCG CATCCGCCTG GCGCAGACCC GCATCGTGGC GGTCGATGAC
GGCGTGGTGT CGGCGCGCTC GGCGGTGCTG GGCAACGTGG TGCCCGCCGG CACCGAGCTG
TTTCGCCTGG TGCGCCAGGG GCGCATCGAA TGGCGCGCCG AACTCGATGC GCAGCAGCTG
GCGCGGGTGC GGCAGGGGCA GGCTGCCCGC CTGACGCTGC CGGGCGGCGT TGCCGCCAGC
GGCACGGTGC GGCTGGTGGC GCCCACCCTG AGCACCAGCA CCGGGCGGGC AACGGTCTAT
GTCAGCCTGG CGCCGGGCAG TGGCGCGCAG GCCGGCATGT TCGCCAGCGG CACGATTGAG
CTGGCCCAGG CGCCGGCCCT GACACTGCCG CAGTCGGCCG TGGTGCTGCG CGATGGCCGC
AGCGATGTCT ATCAGCTGAA CCCGGACGGC GTCACGGTGA CCCGCCGCAC GGTCGTGACC
GGACGCCGCC AGGGCGACCG GGTGGAAGTG GTGTCGGGCC TGGAGGCCAG CGCCCGCGTG
GTGGCCAGCG GCGGCGCTTT CCTGTCGGAA GGCTCGCGGG TCCAGGTTGA AGGCGGCAAG
GCCAAGGCCC AGGCGCCTGT CAGCATCCAA AAAAGGACCA CCAGGAACCT GCTGACCGGC
CTGCGCCTGA ACCCAGCCGG CACCGAGCGG GGCCAGGCAT GA
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| Protein sequence | MTVFRFKGGL TRTTVAQLAF GATVCLAVVA WLVQSMLPAA AAESAEDAVA APSAALTVQL
ATPSTQDWPQ IVQASGPLAP WQEAVVGTET GSLRITELLV DVGSTVKRGQ LMARLADETV
QADLSKQNAA LDQARLNLSQ AQANLQRTRA VAESGALSGQ KMDEYIIDEA LKRVALASSE
ADQKSTRIRL AQTRIVAVDD GVVSARSAVL GNVVPAGTEL FRLVRQGRIE WRAELDAQQL
ARVRQGQAAR LTLPGGVAAS GTVRLVAPTL STSTGRATVY VSLAPGSGAQ AGMFASGTIE
LAQAPALTLP QSAVVLRDGR SDVYQLNPDG VTVTRRTVVT GRRQGDRVEV VSGLEASARV
VASGGAFLSE GSRVQVEGGK AKAQAPVSIQ KRTTRNLLTG LRLNPAGTER GQA
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