| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2965 |
|---|
| Symbol | |
|---|
| ID | 4687814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3129978 |
|---|
| End bp | 3131249 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639835978 |
|---|
| Product | amine oxidase |
|---|
| Protein accession | YP_983185 |
|---|
| Protein GI | 121605856 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2907] Predicted NAD/FAD-binding protein |
|---|
| TIGRFAM ID | [TIGR03467] squalene-associated FAD-dependent desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0856614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00607749 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTCG CCATCGTCGG CGCGGGCTGG GCCGGCTGTG CCGCCGCCGT CGAGGCCACG
CGCCTGGGCC ACCACATCAC GGTTTTCGAA GCTTCGCGCA CCGCCGGCGG CCGCGCGCGG
CGGGTCATGG CCAGCGTGGC CGGCCTGCCG GTCGCCCTGG ACAACGGCCA GCACATCCTG
ATCGGCGCCT ATGCCGAGAC GCTGCGGCTG ATGAAGGAAC TGGGCGCCGA TGAATCCGCG
TCCTTCCTGC GCCTGCCGCT GGCGATGCAG TTCCCCGATG GCAGCGGCCT GAAGCTGCCG
GACTGGCCGG CGCCGCTGGA CGCCTTCGCT GGCATCCTGA CGGCCGGCGG CTGGTCGTGG
GCCGACAAGC TGTCGCTGCT CAAAGTGGCG CTGGGCTGGC GGCTGGGCGG ATTCGCCTGC
CAGCCCGGCC AGTCGGTCAG CGATTTGTGC CGGGGCCTGA CGCCCGGCGC GATGGCGTCG
CTGATCGAGC CGCTGTGCGT GTCGGCGCTG AACACGCCGG CCGAACGCGC CAGCGGCCAG
GTGTTTTTGC GCGTGATGCG CGATGCGCTG TTCGCGCAGG GCGGCGGCTC GAACCTGCTG
CTGCCGCGCG TGGACCTGAA TGCCCTGCTG CCCGATGCGG CGCTGGCGTG GCTGGCGGCG
CACGGCGGGT TGCCGCGTCT GGGCGTTCGA GTGCAGTCGA TTGCGCCGGC AGGCGCTGGC
TGGACCGTTG ACGGCGAAGC ATTTGACCGG GTCGTGCTGG CCTGCCCGCC CAACGAAGCG
GCCCGGCTGG CGCAAGGCAG CGGCCTGGCC GGCGATGCCT TGGCCGGGTG GATCGGGCAG
GCGCGTGGAC TGCGGCATGA AGCCCTGACG ACGGTTTACC TGCATGCCAG CGAAGCCCGT
TTACGCCAGC CCATGCTGGC CTTGCCTTCA AGCCCGGCCG AACCAGCGCA GTTCGTGTTT
GACCGTGGCC AGCTCGGCGG CCCGGCGGGC TTGCTGGCCT TTGTCATCAG CGCCAGCACC
GGCGACGGCG CCACGCTCAC GCGGCAGGTG CTGGCGCAGG CGGCGCGGCA GTTGGGTCTG
ATCGACCTGC GGCCCGTGCA GACGATTGTC GAAAAACGCG CCACCTTTGC CTGCACGCCG
GGCCTGCAGC GCCCTGCCGC ACGAATTGCC GAGGGCCTGC TGGCTTGCGG CGACTACATT
GCCGGCCCCT ACCCGGCCAC ACTGGAAGGC GCGGTGCGCT CGGGGCTTGA GGCCGCCGCG
CAGTTGCACT GA
|
|---|
| Protein sequence | MKVAIVGAGW AGCAAAVEAT RLGHHITVFE ASRTAGGRAR RVMASVAGLP VALDNGQHIL
IGAYAETLRL MKELGADESA SFLRLPLAMQ FPDGSGLKLP DWPAPLDAFA GILTAGGWSW
ADKLSLLKVA LGWRLGGFAC QPGQSVSDLC RGLTPGAMAS LIEPLCVSAL NTPAERASGQ
VFLRVMRDAL FAQGGGSNLL LPRVDLNALL PDAALAWLAA HGGLPRLGVR VQSIAPAGAG
WTVDGEAFDR VVLACPPNEA ARLAQGSGLA GDALAGWIGQ ARGLRHEALT TVYLHASEAR
LRQPMLALPS SPAEPAQFVF DRGQLGGPAG LLAFVISAST GDGATLTRQV LAQAARQLGL
IDLRPVQTIV EKRATFACTP GLQRPAARIA EGLLACGDYI AGPYPATLEG AVRSGLEAAA
QLH
|
|---|
| |