| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2960 |
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| Symbol | |
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| ID | 4686485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3123155 |
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| End bp | 3124318 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639835973 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_983180 |
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| Protein GI | 121605851 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.147665 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0025793 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAA CCGTTGTCTC CCTGGCGAGC GTTGCCGCGC TGCTGGTCGC CTGCTCCCGG
CCCGCGCCGC CCGAGGAACC GGTTCGCGCC GTGAGGGTCA TCACCGTCGG CACCAGCGCC
TATGCTTCGC GCCACGAATA TGCCGGTGAA GTCCGGGCGC GGGTCGAGTC CCGGCTCGGA
TTCCGGGTCG GCGGCAAGCT CATCAAGCGG CAGGCCGAAC TCGGCCAGCG GGTCTTGGCC
GGGCAGGTGC TGGCCCAGCT CGATCCGCAG GACTACCGGC TGGCCTTTGA CGCCGCCCGC
GCCCAGGTGA GCGCCGCCGC CATCAACCGC AACCTGGCCG CCGCCGATTT CAGGCGCTAC
CAGGCGCTGA AGGACCAGAA CTTCATCAGC GGCGCCGAAC TGGAGCGCCG TGAGGCCACC
CTGAAGGCCG CGCAGGCGCA GCTGGAGCAG GCCCAGGCGC AGTCGGCGGT GCAGGGCAAC
CAGACGAACT ACGCGGTGCT GACGGCCGAT GTGTCCGGCA TCGTGACGGC GGTGGAAGCC
GAGCCGGGCC AGGTCGTGGC CGCTGGCGCG CCGGTGCTGC GGATTGCCGC CGACGGCGTG
CGCGACGTGG TGTTCTCGGT GCCCGAGGAC CGGGTGGCCG GGCTCAAGGT CGGTGCGCCG
GTGAAAATTC GCATCTGGGC GCAAAACACG GAATTGACCG GCAAGGTGCG CGAGGTCGCC
GCCAGCAGCG ATCCGGTCAC GCGCACCTAT CCGGTCAAGG TGGCGATGGA CGCCAAGGCG
CCGCCGCCGC TGGGCGCAAC GGTCTATGTC ACCGTCGAGG CGGGCGCTCC CACCGGCACG
CCAGTCATCA AGCTGCCCAG CAGCGCCCTG CGCCGTGACG GCCAGGCGAC GACGGTGTGG
GTGCTCGACA AGGCCGCCAT GACCGTCAGG CCGCAGGTGA TCCAGGTGGC GACGGCCGAC
GGCAATGAGG TCGTGGTTTC GGGCCTTGAG CCGGGGATGC AGGTGGTCAG CGCCGGCGTG
CATGTGCTGT CGCCGGGGCA AAAAGTCAGT ATTTATCAGT CAAATATGCC TTCTGCGCAA
GAACCACGGG CACAAGCAGC TCCTGATTCG ATAGCAAATC AGGTTCCTGC CGTGTCGGCT
GCTTCAGCCC CTGGCGCGAA GTGA
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| Protein sequence | MKKTVVSLAS VAALLVACSR PAPPEEPVRA VRVITVGTSA YASRHEYAGE VRARVESRLG
FRVGGKLIKR QAELGQRVLA GQVLAQLDPQ DYRLAFDAAR AQVSAAAINR NLAAADFRRY
QALKDQNFIS GAELERREAT LKAAQAQLEQ AQAQSAVQGN QTNYAVLTAD VSGIVTAVEA
EPGQVVAAGA PVLRIAADGV RDVVFSVPED RVAGLKVGAP VKIRIWAQNT ELTGKVREVA
ASSDPVTRTY PVKVAMDAKA PPPLGATVYV TVEAGAPTGT PVIKLPSSAL RRDGQATTVW
VLDKAAMTVR PQVIQVATAD GNEVVVSGLE PGMQVVSAGV HVLSPGQKVS IYQSNMPSAQ
EPRAQAAPDS IANQVPAVSA ASAPGAK
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