| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2950 |
|---|
| Symbol | |
|---|
| ID | 4688197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3108111 |
|---|
| End bp | 3109274 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639835957 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_983170 |
|---|
| Protein GI | 121605841 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.967573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.434807 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGA TTCGACTTCA CCTGATCGCT GCCGCCGCCG TCCTGTGCGC CAGTGCCGCC
TCCGCGCAGG CGCCGGCCAA GCTCAAGGTC GGACTGATGC TGCCCTACAC CGGCACCTAC
GCGTCGCTGG GCACGGCGAT TGAAAACGGC TTCAAACAGT ATGTGGCCGA GCAGGGCGGC
AAGCTGGGCG GGCGCGAAAT CGAATTCGTC AAGGTCGATG ACGAGTCTGA CCCGTCCAAG
GCGACCGACA ACGTCAACAA GCTGATCAAG CGCGACAACG TCGATGTGCT GATCGGCTCG
GTGCATTCCG GCGTGGCCAT GGCGATGGCC AAGGTCGCCA AGGACACCGG CACGCTGCTG
ATCGTTCCCA ATGCCGGCGC GGATGCCGTG ACCGGGGCCA TGTGCGCGCA AAACATCTTC
CGCAGTTCAT TCTCGAACTG GCAGCCGGGC TACGCCATGG GCGAAGTGGT CGCCAAGAAG
GGCCACAAAA AGGTCGTCAC CATCACCTGG AAGTACGCCG CCGGCGACGA GTCGGTGCGC
GGCTTCAAGG AAGCGTTTGA AAAAGGCGGT GGCAAGGTCG TCAAGGAACT CAGCGTGCCT
TTCCCGAACG TCGAGTTCCA GGCCTTGCTG ACCGAAATCG CGGCCACCAG GCCCGATGCC
GTGTACACCT TCTTTGCCGG TGGCGGCGCC GTGAAGTTCG TCAAGGACTA TGCCGGCGCC
GGGCTGAAGA AAAGCATTCC CCTGTACGGC GCAGGTTTCC TGACCGACGG CACGCTCGAA
GCGCAGGGGC TTGATGCCGA TGGCCTGCTG ACCACGCTGC ACTATGCCGA CGCGCTGGGC
ACGCCGCGCG ACACCAGTTT CCGCCTGGCC TATGCCAAAG CCTACAAGCA GCAGCCCGAC
GTGTATGCGG TTCAGGGTTA CGACGCGGCG CAGATGCTGG GCGTGGGACT GGCCGCCGTC
AAGGGCGACA CCAGCAAGAA GGCCGAGTTT GCCGATGCCC TGCACAAGGC AAAAATCGAC
AGCCCGCGCG GCCCGTTCAC GATTTCCAGG TTCAACAACC CGGTGCAGGA CATCTATTTG
CGCCAGGTCA CGGGCAAGGA AAACAAGCTT GTCGGCGTCG CCAGCAAGGC GCTGGCCGAT
CCGGGTCGCG GCTGCCGGCT GTAA
|
|---|
| Protein sequence | MTKIRLHLIA AAAVLCASAA SAQAPAKLKV GLMLPYTGTY ASLGTAIENG FKQYVAEQGG
KLGGREIEFV KVDDESDPSK ATDNVNKLIK RDNVDVLIGS VHSGVAMAMA KVAKDTGTLL
IVPNAGADAV TGAMCAQNIF RSSFSNWQPG YAMGEVVAKK GHKKVVTITW KYAAGDESVR
GFKEAFEKGG GKVVKELSVP FPNVEFQALL TEIAATRPDA VYTFFAGGGA VKFVKDYAGA
GLKKSIPLYG AGFLTDGTLE AQGLDADGLL TTLHYADALG TPRDTSFRLA YAKAYKQQPD
VYAVQGYDAA QMLGVGLAAV KGDTSKKAEF ADALHKAKID SPRGPFTISR FNNPVQDIYL
RQVTGKENKL VGVASKALAD PGRGCRL
|
|---|
| |