| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2948 |
|---|
| Symbol | |
|---|
| ID | 4687994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3105719 |
|---|
| End bp | 3107302 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639835955 |
|---|
| Product | benzoate-CoA ligase family |
|---|
| Protein accession | YP_983168 |
|---|
| Protein GI | 121605839 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR02262] benzoate-CoA ligase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.178077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.340429 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCC CATCAAACAC CGCGCCCCAC ATCCCGGCAC CCGGCGCGCA CTTCAATTTC
GCCCAGCACC TGATCGGGTG CAACGCCGCG CACCCCGCCA GGACAGCCTA TATCGACGAT
GTCGAGACAG TAAGCTACGG CGAACTGGCC GAGCGCATCC GCCGTCTGGC CGCCGCACTG
CTGGCCACTG GCGTTCGCCG CGAGGAACGC GTGCTGCTGC TGATGCACGA CTGCAGCGAC
TGGCCGGTCA GTTTTCTGGG CGCGATGTAC GCCGGCATCG TGCCGGTGGC GCTCAACACG
CTGCTGACGA GCGAAGACTA TGCCTTCATG CTGGAGCACA GCCGTGCCCA GGCTGTGCTG
GTGTCGGGCG CTCTCTTGCC GATACTGCAG GAAGCCATGG CCAAATCGGC CCATGAGGTC
AGGGCGGTCA TCGTCTCGCG CCCCACTGGC CTCCTGCCAG AAGGCAGCGT GGCGCTGGAC
AACCTGATTG CCCAGCATGC GCCGCTGGCC CAGCCGGCCT CCACCTGTCC CGACGATCCG
GGTTTCTGGC TGTATTCCTC CGGCTCCACG GGAAAGCCCA AAGGCACGCT GCACACCCAT
GCCAATCCCT ACTGGACCGC CGAGCTGTAC GGCAAGCCGG TGCTGGGCAT TAGCGAGCAC
GATGTGTGTT TTTCCGCCGC CAAGCTGTTC TTTGCCTACG GCCTGGGCAA CGCCCTGAGC
TTTCCGCTCA GCGTCGGCGC CACCGTGGTC CTGATGGCCG AACGCCCGAC GCCGGCAGCC
ACCTTCAAAC GCTGGGTGGA GCACCAGCCG ACGGTGTTTT TTGGCGCGCC CACCGGTTTT
GCAGGCATGC TGGCCTCGCC CGACCTGCCC GCCAAAAACC AGGTGTCGCT GCGACTGGCG
TCTTCGGCCG GCGAGGCCTT GCCGGCCGAC CTGGGCGAAC GCTTCACGGC CCACTATGGC
GTGGAGATCA TCGACGGCAT TGGTTCGACC GAAATGCTGC ATATCTTTTT GTCCAACCTT
CCCGGGAAAG TGCGCTACGG CACCACCGGC TGGCCGGTGC CCGGCTACGA GGTCGAACTG
CGCGGCGACG ATGGCCGCCC GGTTCCCGAC GGCGACACCG GCGACCTCTA CATCAAGGGG
CCGAGCGCGG CGCTGATGTA CTGGGGCAAC CGCGAGAAGT CGCGCGAAAC CTTCCAGGGC
GCGTGGACCA AGAGCGGCGA CAAGTACGTT CGCAACCAGG ACGGAACCTA CACCTATTCG
GGCCGCAGCG ACGACATGCT CAAGGTCAGC GGCATTTACG TCTCGCCCTT CGAGGTCGAG
GCCACTCTGT CGCAACATCC GGCCATTCTG GAAGCGGCCG TCATTGGCGT GCCGGACACC
GAAGGCCTGA CCAAAACCAA GGCTTATGTG GTGCTCAAGA CCGGCCAGCA GGTCAGCGAG
GCCGAACTCA AGGCCTTCGT CAAGGAGCGC CTGGCGCCTT ACAAATACCC GCGCAGCATC
GAGTTCATGA CCGAGTTGCC CAAGACCGCC ACCGGCAAGA TCCAGCGCTT CAAGCTGCGC
GGTCTCGAAG GCGCGGTCAA ATGA
|
|---|
| Protein sequence | MTTPSNTAPH IPAPGAHFNF AQHLIGCNAA HPARTAYIDD VETVSYGELA ERIRRLAAAL
LATGVRREER VLLLMHDCSD WPVSFLGAMY AGIVPVALNT LLTSEDYAFM LEHSRAQAVL
VSGALLPILQ EAMAKSAHEV RAVIVSRPTG LLPEGSVALD NLIAQHAPLA QPASTCPDDP
GFWLYSSGST GKPKGTLHTH ANPYWTAELY GKPVLGISEH DVCFSAAKLF FAYGLGNALS
FPLSVGATVV LMAERPTPAA TFKRWVEHQP TVFFGAPTGF AGMLASPDLP AKNQVSLRLA
SSAGEALPAD LGERFTAHYG VEIIDGIGST EMLHIFLSNL PGKVRYGTTG WPVPGYEVEL
RGDDGRPVPD GDTGDLYIKG PSAALMYWGN REKSRETFQG AWTKSGDKYV RNQDGTYTYS
GRSDDMLKVS GIYVSPFEVE ATLSQHPAIL EAAVIGVPDT EGLTKTKAYV VLKTGQQVSE
AELKAFVKER LAPYKYPRSI EFMTELPKTA TGKIQRFKLR GLEGAVK
|
|---|
| |