| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2945 |
|---|
| Symbol | |
|---|
| ID | 4687826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3102572 |
|---|
| End bp | 3103546 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639835952 |
|---|
| Product | anaerobic benzoate catabolism transcriptional regulator |
|---|
| Protein accession | YP_983165 |
|---|
| Protein GI | 121605836 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.992735 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAGCA ATATATTGCA TGCATCAGGG TTAGTCCCTG ATACCTCCAT CCTTCCTCTT
CAAACCGCCG AACTGCCGCC CGCCGGGCTT CAGGAGCCGC AGGTGGAGGA AAAAAATCTA
TTTCTCGCCG CCCTGGGTGA CCGGGTTCGG GCGCTGCGGG CGCGGCGCGG CATGACACGC
AAAGCCGTGT CGATTGCAGC CGACGTGTCT GAGCGGCATC TGGCGAACCT GGAGTATGGC
GAAGGCAACG CGTCCATCCT GGTGCTGCTG CAGGTGGCCC GCGCGCTGCA CTGCTCACTG
GCCGAACTGA TTGGCGATGT GACCACCTCG ACGCCCGAAT GGCTCTTGAT TCGCGAACTG
CTGGAAACGC GCGACGATGC CTCGCTGCGC CGCGTGCGCA TCGCGATTGG CGAGTTGCTG
GGAACGGGCA GCGGCAACAC CACCCTCTGT TCGCGCGTGG CGCTGATCGG CCTGCGCGGG
GCCGGAAAGT CCACGCTGGG CGCCCTGCTG GCCGAAGACC TGGGATTTCC GTTTGTCGAA
CTGAGCCGGG AAATCGAGAA GTTCGCGGGC TGCAGCGTCT CGGAAATCCA GGCGCTCTAC
GGCATGAATG CCTACCGCCG CTACGAACGC CGGGCGCTGG AAGAGACGAT CCAGATCTAC
CCGGAAGCCG TCATTGCCAC GCCCGGCGGC CTGGTGTCGG ACCCGGCCAC GTTCAACCAG
CTGCTGTCCC ACTGCACCAC CGTCTGGCTG CAGGCCGACC CTGAAGACCA CATGAAACGG
GTGCTGGCGC AGGGTGACTT GCGGCCCATG GCGGCCAGCA AGCAGGCCAT GGAAGACCTC
AAGGGCATCC TGGCAGGTCG TGCCGCTTTC TACTCGAAGG CGCAGTACAA GGTCGATACC
AGCACCCAGA GCCTGGAGCT GTCTTTCCAG GCCTTGCGCG AAATGGTGCG CAAGGCGCTT
CAGTTGCCAG TTTGA
|
|---|
| Protein sequence | MSSNILHASG LVPDTSILPL QTAELPPAGL QEPQVEEKNL FLAALGDRVR ALRARRGMTR
KAVSIAADVS ERHLANLEYG EGNASILVLL QVARALHCSL AELIGDVTTS TPEWLLIREL
LETRDDASLR RVRIAIGELL GTGSGNTTLC SRVALIGLRG AGKSTLGALL AEDLGFPFVE
LSREIEKFAG CSVSEIQALY GMNAYRRYER RALEETIQIY PEAVIATPGG LVSDPATFNQ
LLSHCTTVWL QADPEDHMKR VLAQGDLRPM AASKQAMEDL KGILAGRAAF YSKAQYKVDT
STQSLELSFQ ALREMVRKAL QLPV
|
|---|
| |