| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2938 |
|---|
| Symbol | |
|---|
| ID | 4686376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3093570 |
|---|
| End bp | 3094691 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639835945 |
|---|
| Product | transglutaminase domain-containing protein |
|---|
| Protein accession | YP_983158 |
|---|
| Protein GI | 121605829 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.135746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCG TACGCCGCAG CTTCCTCAAG AACACCGCAG CCGCCGCCAT GGCCGCTGCC
TTGCCCGCCC TTGGTTTCGC CCAGGCACCC GCGGCACCTG CTTCACGCCG CAACTTCGCT
CCCCAAAGCG GCGGCTGGCG CACCTTTGAG GTCACCACCC GCGTGGACAT TCCCAAGCCC
GAAGGCGTGA CCCGGGTGTG GCTGCCGATT CCGTCGGTCA ACAGCGACTA CCAGCATTCG
CTCGAAAACG GATTTTCAAG CAACGGAACG GCCAAGCTGG TGCAGGACGG CCAGGACGGC
GCAAAAATGC TCTACGTTGA ATTTGCTGCC AGCGAAGCCA AGCCGTTTGT CGAAATCACC
AGCCGCGTGC AGACGCAGGG CCGCGCGATG GACTGGTCGC AAAAAACCGC CAAGGCCGAG
GAAGCCGACA CGCTGCGCTA TTTCACCCGC GCCACCACCT TGATTCCGAC CGACGGCATC
GTGCGCAAGA CCGCGCTGGC CGCCACGCAG GGCGCTAGAG GCGATGTCGA AAAAGCCCAG
AAGCTCTATG ACTGGATCGT GGCCAACACC TACCGCGAAC CCAAGGTGCG CGGCTGCGGC
GAAGGCGACA TCAAGACCAT GCTGGAAACC GGCAACCTGG GCGGCAAATG CGCCGACCTG
AACGCGCTGT TTGTCGGCCT GTGCCGCTCG GTGGGTGTGC CCGCGCGCGA TGTGTACGGC
ATCCGGCTGG TGCCATCGGC CTTTGGCTAC AAGGAGCTGT CGGGCAACCC GGCCAGCCTC
AAGGGCGCGC AGCACTGCCG CTCCGAGGTG TACTTGAAGG GCTATGGCTG GGTGGCGATG
GACCCGGCCG ACGTGGCCAA GGTCATGCGC CTGGAAACCG CCGACTGGAT CAAGAACACC
ACCAACCCGG TGGTCGCGCC GGTCAACAAG GCGCTGTTCG GCGGCTGGGA AGGCAACTGG
ATGGCCTACA ACACCGCGCA CGATGTGGCC TTGCCCAATT CCAAGGGCGA CAAGCTCGGT
TTCCTGATGT ACCCAGTTGG CGAGAATGCC GCCGGCCGCT TCGACTCCTA CGCGCCGGAT
GACTTCAAGT ACCAGATCAC CGCCAGGGAA ATCAAGGCCT GA
|
|---|
| Protein sequence | MTTVRRSFLK NTAAAAMAAA LPALGFAQAP AAPASRRNFA PQSGGWRTFE VTTRVDIPKP
EGVTRVWLPI PSVNSDYQHS LENGFSSNGT AKLVQDGQDG AKMLYVEFAA SEAKPFVEIT
SRVQTQGRAM DWSQKTAKAE EADTLRYFTR ATTLIPTDGI VRKTALAATQ GARGDVEKAQ
KLYDWIVANT YREPKVRGCG EGDIKTMLET GNLGGKCADL NALFVGLCRS VGVPARDVYG
IRLVPSAFGY KELSGNPASL KGAQHCRSEV YLKGYGWVAM DPADVAKVMR LETADWIKNT
TNPVVAPVNK ALFGGWEGNW MAYNTAHDVA LPNSKGDKLG FLMYPVGENA AGRFDSYAPD
DFKYQITARE IKA
|
|---|
| |