Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2925 |
Symbol | |
ID | 4689633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 3079179 |
End bp | 3082700 |
Gene Length | 3522 bp |
Protein Length | 1173 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639835932 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_983145 |
Protein GI | 121605816 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.917555 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGCA TGTTTGTCCA TCTAAGAATC CACACCGAGT TTTCAGTCGT TGACGGTACC AACCGCATTG ATGAAATTGT TGCCGCCGCT GCCGCCGACC AGCAACCCGC GCTGGCCATT ACCGACCTGA GCAACCTGTT TGGCACGGTC AAGTTCTACA AGGAAGGGCG CAAGACGGGC GTCAAGCCGC TGATCGGCGC CGACATCTGG CTCGAAGCGC CCGGCAAGGA AGCCGGCGCG CCGGCTTCCC GCCTCTTGCT GCTGGTGCAG GACAGCCAAG GCTACCTCAA CCTGTGCGAG CTGATCACCC GCGCCTGGAC AAAAAATGTG GTGCGCGACC AGGCGGTCGT CAAGCTGCAA TGGCTGCAGG AGTTGAACGA AGGCCTGATC GCCCTGTCGG GCGCGCAGCG CGGCGCCGTG GGCCAGGCCT TGGTGCAGGG CGACAGCGCA CGGGCCATGG AGTGCGCGCT GCATCTGTCG GGCATGTTTC CCCGGCGCTT CTACCTGGAG CTGCAGCGCT CAGGGCATCC CGAGGACGAA CGCCATGTCA CCGCCGCCGT GCAACTGGCG GCGCGGCTGA AGTTGCCGGT GGTAGCCACG CATCCGGTCC AGTTCCTGAC CTATGACGAC TACGAGGCGC ATGAAGCGCG TGTCTGTATT TCAGAAGGCG AAATCCTGGG CAATGCACGC CGCGTGCGCA AGTTCACCCG CGAGCAGTAT TTCAAGTCGG CTGACCAGAT GAAGGCGCTG TTTGCCGATG TGCCGTCGGC GCTGGCCAAC ACGGTCGAAA TCGCCAAGCG CTGCAGCCTC ACGCTGGAAC TGGGCAAGCC CATGCTGCCC GAATTCCCGA CGCCCGAAGT CAATGGCTCT CGCATGCCGC CTGAAGACTA CTTTCGCCAC ACCTCGTTCG AGGGGCTGGA AGAGCGGCTG CTGCACCTGT ACCCGAACCC GGCGCAGCGC GACGCCAAGC GGCCCGAATA CGTCGCGCGG CTCGAATTCG AGATCAATAC CATCCTGAAG ATGGGTTTCC CCGGCTATTT CCTGATCGTT GGCGACTTCA TCCAGTGGGC CAAGAACAAC GGCTGCCCGG TCGGGCCGGG ACGCGGCTCC GGCGCCGGCT CGCTGGTCGC CTATGCGCTG AAGATCACCG ACCTCGACCC GCTGCGCTAC AACCTGCTGT TCGAGCGCTT CCTGAACCCC GAGCGCGTCT CGATGCCCGA CTTTGACATC GACTTTTGCC AGAGCAACCG CGACCGCGTG ATCGACTACG TGAAGGACAA GTACGGCCAT GCGGCGGTCA GCCAGATCGT CACCTTCGGC ACCATGGCGG CGCGCGCGGC GATTCGCGAC GTCGGCCGGG TGCTCGATTT CCCCTACGGC TTTTGCGACG GCATTTCCAA GCTGATTCCG AACAAGCCCG GCCAGGCGGT GACGCTGCAA CTGGTGCCGG CCGACCGCAA GAAAAATGAC AAGATGGTCT ATGCGCTGGA GGCCGAACCG GTGCTGGCCG ACCGCGAAAG CAAGGAGGAA GACGTTCACA CGCTGCTCGA CCTCGCGCGC AAGCTCGAAG GCCTCACGCG CAATGTCGGC ATGCATGCCG GCGGCGTGTT GATCGCGCCG GGCAAGCTGA CCGATTTTTG CCCGCTGTAT CTGCAGCCCG GCAGCACGTC GGCGGTCAGC CAGTTCGATA AGAACGACGT GGAGGCGATT GGCCTGGTCA AGTTCGACTT CTTGGGGCTG GCCACGCTGA CCATCCTGGA AATTGCGCGC GAGTTCATCA TCGCGCGCTA CCCGGCGCAA AAAGACTTCA AGTTCGAAGA CCTGCCGCTC GACGATGCGC GGGTGTACCG GCTGTTTGCC GACGGCAATA CCGAAGCCGT GTTCCAGTTT GAAAGTATCG GCATGCAGCG CATGCTCAAG GACGCCCGGC CCGACCGGCT CGAAGACCTG ATCGCGATGA ACGCGCTCTA CCGTCCCGGC CCGATGGACC TGATTCCGAC CTACATTGCC CGAAAGCAGG GCAAGGAAGT GCCCGAATAC CCGGACCCGC GCGTCAAGCC GATGCTGGAG GAAACCTACG GCATCATGGT CTATCAGGAG CAGGTGATGC AGACCGCGCA GATCCTGGGC GGCTACTCGC TGGGCGGCGC CGACATGCTG CGCCGCGCGA TGGGTAAAAA AGACGAGAAG GAGATGGCCC AGCACCGGGA AATCTTCCGC AAGGGCGCCG GCATCAACGG CCTGGCGCAG GAAAAAGCCG ACGAGGTGTT CGACCTGATG GAAAAGTTCG CGGGCTACGG CTTCAACAAG TCGCACTCCG CCGCCTACGC GCTGCTGGCC TACCACACGG CCTGGCTCAA GGTACATTTT CCGGCCGAGT TTTTCGCGGC CAACATGACC GTCGAAATGG ACGACACCGA CAAGCTAAAA ATCCTGTTCG GCGACGCGCA AAAGATGGGG CTGAGCTTCG AGGTGCCCGA CATCAACCAG GGCGACTACC GCTTCGAGCC GATCACCGCC AAATCGGTGC GCTACGGCCT GGGCGCGATC AAGGGCACCG GCCAGCAGGC GATTGCCGCC ATCGTCGCCG CGCGCAAGGA AGGCGGCCCG TTCACCTCGC TGTTTGATTT TTGCGTGCGC GTGGACCGCA GCAAGATGAA CAAGCGCACG GTCGAAGCGC TGATCAAGGG CGGCGCCTTC GACAGCCTGC ACCTGAACCG CGCCGAGCTG CTGGCGTCCA GCGAGCGCGC TTTCGATTTT GCCGCCGCCA CGCAAGCCAA CGCCAACCAG GGCGGGCTGT TCGACATGTC CGACTCGCAC GCGGCCAGCA CGCAGGAGCC GGAACTGGTC GAGATGCCGA TGTTCGGCGT CAAGGCGCGG CTGGTGCTGG AGAAAACCGC CATCGGCTTT TACCTGTCGG GCCACCTGTT CGACGAGGTG GAGCAGGAAG TGCGGCAGTT CGCCAAGCGA AGCATTGAAG ACATGAGCGA GTCCCGGGAT TCTCAACTGC TCGCCGGCAT CGTGACCGAC CTGCGCATCA TCAACGGCAA CCGCGGCAAG CTGATCATCT TCAAGCTGGA CGACAAGACC GATGTGCTGG AAGTGTCGGT GGACGAGGCG ACCTTCAACG CCAACCGCAA CCTGCTCAAG GAAGACGAGC TGGTCATTGT CCAAGGCACG CTGCAGGGCG CATCCGAGCG CTTCGGCCGG CGCTTCAAGA TCACGCAGGT GTGGGATCTG GAGTCGGCGC GCTGCCGGTT CGGCAAGTAC CTGCGCGTGG CCGTCAACGG CAAGGCGCCG GATATTTCAA AGCTGGTCAG GGACTTTCCG CCGCGTTCAA GCGAGGCGGC GGACCCGTCC GAGCCCGTGC GTGGCTTGCC CGTGCGCCTG AGCTTGCGCC GTGAAACCGC GACGGCTGAG CTGCACCTGG GCGACGCGGC CCGGTTTTTC CCGACCGATG CGGCGCTGGC CAGCTGGATG GCGCAGGCCG ACAAAGGGCT GGCGCGCATC GTTTATGAGT GA
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Protein sequence | MKRMFVHLRI HTEFSVVDGT NRIDEIVAAA AADQQPALAI TDLSNLFGTV KFYKEGRKTG VKPLIGADIW LEAPGKEAGA PASRLLLLVQ DSQGYLNLCE LITRAWTKNV VRDQAVVKLQ WLQELNEGLI ALSGAQRGAV GQALVQGDSA RAMECALHLS GMFPRRFYLE LQRSGHPEDE RHVTAAVQLA ARLKLPVVAT HPVQFLTYDD YEAHEARVCI SEGEILGNAR RVRKFTREQY FKSADQMKAL FADVPSALAN TVEIAKRCSL TLELGKPMLP EFPTPEVNGS RMPPEDYFRH TSFEGLEERL LHLYPNPAQR DAKRPEYVAR LEFEINTILK MGFPGYFLIV GDFIQWAKNN GCPVGPGRGS GAGSLVAYAL KITDLDPLRY NLLFERFLNP ERVSMPDFDI DFCQSNRDRV IDYVKDKYGH AAVSQIVTFG TMAARAAIRD VGRVLDFPYG FCDGISKLIP NKPGQAVTLQ LVPADRKKND KMVYALEAEP VLADRESKEE DVHTLLDLAR KLEGLTRNVG MHAGGVLIAP GKLTDFCPLY LQPGSTSAVS QFDKNDVEAI GLVKFDFLGL ATLTILEIAR EFIIARYPAQ KDFKFEDLPL DDARVYRLFA DGNTEAVFQF ESIGMQRMLK DARPDRLEDL IAMNALYRPG PMDLIPTYIA RKQGKEVPEY PDPRVKPMLE ETYGIMVYQE QVMQTAQILG GYSLGGADML RRAMGKKDEK EMAQHREIFR KGAGINGLAQ EKADEVFDLM EKFAGYGFNK SHSAAYALLA YHTAWLKVHF PAEFFAANMT VEMDDTDKLK ILFGDAQKMG LSFEVPDINQ GDYRFEPITA KSVRYGLGAI KGTGQQAIAA IVAARKEGGP FTSLFDFCVR VDRSKMNKRT VEALIKGGAF DSLHLNRAEL LASSERAFDF AAATQANANQ GGLFDMSDSH AASTQEPELV EMPMFGVKAR LVLEKTAIGF YLSGHLFDEV EQEVRQFAKR SIEDMSESRD SQLLAGIVTD LRIINGNRGK LIIFKLDDKT DVLEVSVDEA TFNANRNLLK EDELVIVQGT LQGASERFGR RFKITQVWDL ESARCRFGKY LRVAVNGKAP DISKLVRDFP PRSSEAADPS EPVRGLPVRL SLRRETATAE LHLGDAARFF PTDAALASWM AQADKGLARI VYE
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